ATP synthase evolution on a cross-braced dated tree of life

Autor: Tara A. Mahendrarajah, Edmund R. R. Moody, Dominik Schrempf, Lénárd L. Szánthó, Nina Dombrowski, Adrián A. Davín, Davide Pisani, Philip C. J. Donoghue, Gergely J. Szöllősi, Tom A. Williams, Anja Spang

Publikováno v: Nature Communications, Vol 14, Iss 1, Pp 1-18 (2023)

Abstract The timing of early cellular evolution, from the divergence of Archaea and Bacteria to the origin of eukaryotes, is poorly constrained. The ATP synthase complex is thought to have originated prior to the Last Universal Common Ancestor (LUCA)

Externí odkaz: https://doaj.org/article/286047c5e1dd4a319a0f73ef58a4700e

Rooting Species Trees Using Gene Tree-Species Tree Reconciliation

Autor: Brogan J, Harris, Paul O, Sheridan, Adrián A, Davín, Cécile, Gubry-Rangin, Gergely J, Szöllősi, Tom A, Williams

Publikováno v: Methods in molecular biology (Clifton, N.J.). 2569

Interpreting phylogenetic trees requires a root, which provides the direction of evolution and polarizes ancestor-descendant relationships. But inferring the root using genetic data is difficult, particularly in cases where the closest available outg

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::70d6ed23982a70110ae0226c5f717647
https://pubmed.ncbi.nlm.nih.gov/36083449

Relative Time Inference Using Lateral Gene Transfers

Autor: Adrián A. Davín, Dominik Schrempf, Tom A. Williams, Philip Hugenholtz, Gergely J. Szöllősi

Publikováno v: Methods in Molecular Biology ISBN: 9781071626900

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::37076491b5d760532396482ef04de194
https://doi.org/10.1007/978-1-0716-2691-7_4

A rooted phylogeny resolves early bacterial evolution

Autor: Gergely J. Szöllősi, Anja Spang, Lénárd L. Szánthó, Gareth A. Coleman, Philip Hugenholtz, Tara A. Mahendrarajah, Adrián A. Davín, Tom A. Williams

Publikováno v: Coleman, G, Davín, A A, Mahendrarajah, T, Szantho, L, Spang, A, Hugenholtz, P, Szöllősi, G J & Williams, T 2021, ' A rooted phylogeny resolves early bacterial evolution ', Science, vol. 372, no. 6542, eabe0511 . https://doi.org/10.1126/science.abe0511

Reconstructing ancestral bacteria The origin of the eubacteria and phylogenetic relationships between subgroups have been difficult to resolve. Applying a phylogenetic analysis and recent computational methods to the expanded diversity of bacterial s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::93ec0ed316747663034fce81ba68c649
https://pubmed.ncbi.nlm.nih.gov/33958464

Resolving widespread incomplete and uneven archaeal classifications based on a rank-normalized genome-based taxonomy

Autor: Aaron J. Mussig, Philip Hugenholtz, William B. Whitman, Christian Rinke, Maria Chuvochina, Pierre-Alain Chaumeil, David W. Waite, Donovan H. Parks, Adrián A. Davín

An increasing wealth of genomic data from cultured and uncultured microorganisms provides the opportunity to develop a systematic taxonomy based on evolutionary relationships. Here we propose a standardized archaeal taxonomy, as part of the Genome Ta

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a71837bcff500cb14d39479188c18975
https://doi.org/10.1101/2020.03.01.972265