Zobrazeno 1 - 10
of 19
pro vyhledávání: '"Adam Robbins-Pianka"'
Autor:
Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Publikováno v:
mSystems, Vol 3, Iss 3 (2018)
ABSTRACT Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unk
Externí odkaz:
https://doaj.org/article/0301cbad620f4f3490bc93e225ec5d0c
Autor:
Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Justine Debelius, James T. Morton, Embriette Hyde, Adam Robbins-Pianka, Rob Knight
Publikováno v:
mSystems, Vol 2, Iss 2 (2017)
ABSTRACT The use of sterile swabs is a convenient and common way to collect microbiome samples, and many studies have shown that the effects of room-temperature storage are smaller than physiologically relevant differences between subjects. However,
Externí odkaz:
https://doaj.org/article/2c012213eb6846f487fefae97b198374
Autor:
Jai Ram Rideout, Yan He, Jose A. Navas-Molina, William A. Walters, Luke K. Ursell, Sean M. Gibbons, John Chase, Daniel McDonald, Antonio Gonzalez, Adam Robbins-Pianka, Jose C. Clemente, Jack A. Gilbert, Susan M. Huse, Hong-Wei Zhou, Rob Knight, J. Gregory Caporaso
Publikováno v:
PeerJ, Vol 2, p e545 (2014)
We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA) sequences generated on next-generation sequencing platforms to operational taxonomic units (OTUs) for microbial community
Externí odkaz:
https://doaj.org/article/043dcb23f6bc48569887bfb4c47a95f4
Autor:
Joshua Shorenstein, Antonio Gonzalez, Mingxun Wang, Jeff DeReus, Daniel McDonald, Evan Bolyen, Stephanie B. Orchanian, Tomasz Kosciolek, J. Gregory Caporaso, Jai Ram Rideout, Matthew R. Dillon, Semar Petrus, Jon G. Sanders, Gail Ackermann, Austin D. Swafford, Rob Knight, Hannes Holste, Adam Robbins-Pianka, Pieter C. Dorrestein, Yoshiki Vázquez-Baeza, Stefan Janssen, Jose A. Navas-Molina, Colin J. Brislawn
Publikováno v:
Nature methods, vol 15, iss 10
Nature methods
Nature methods
Multi-omic insights into microbiome function and composition typically advance one study at a time. However, in order for relationships across studies to be fully understood, data must be aggregated into meta-analyses. This makes it possible to gener
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a008850da7123383da7b6085cffa2945
https://doi.org/10.1038/s41592-018-0141-9
https://doi.org/10.1038/s41592-018-0141-9
Autor:
Laura Norris, Ryan Langendorf, Joel Basken, Adam Robbins-Pianka, Joseph Azofeifa, Timothy D. Read, Maria Lai
Publikováno v:
Cancer Research. 80:4689-4689
Recent evidence suggests that co-treatment with BRD4 and MEK inhibitors can lead to synergistic suppression of MAPK signaling, however, little is known about the mechanism of action of this synergy. In a triple negative breast cancer cell line model,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::295e6361133e2f9b46b82b06a086ff3c
https://doi.org/10.1158/1538-7445.am2020-4689
https://doi.org/10.1158/1538-7445.am2020-4689
Autor:
Maria Lai, Laura Norris, Adam Robbins-Pianka, Joseph Azofeifa, Timothy D. Read, Joel Basken, Ryan Langendorf
Publikováno v:
Cancer Research. 80:1272-1272
Cell type and lineage is driven, in large part, by changes in transcription factor activity. Particularly in cancer, misregulation of transcription factor binding can lead to de-differentiated states and overproliferation. Recent work suggests that e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e5669bf258234c84129dc26df20885f4
https://doi.org/10.1158/1538-7445.am2020-1272
https://doi.org/10.1158/1538-7445.am2020-1272
Autor:
Joshua Ladau, Philip Hugenholtz, Jessica L. Metcalf, Jessica L. Green, Lingjing Jiang, Qiyun Zhu, Pieter C. Dorrestein, Grant Gogul, Clarisse Marotz, Robert R. Dunn, Varykina G. Thackray, Pavel A. Pevzner, Alison Vrbanac, Embriette R. Hyde, Katherine S. Pollard, Yoshiki Vázquez-Baeza, Justine W. Debelius, Jose A. Navas-Molina, Alexander A. Aksenov, Lindsay DeRight Goldasich, Dmitry Meleshko, Paul E. Wischmeyer, Yingfeng Chen, Hosein Mohimani, Naseer Sangwan, Gholamali Rahnavard, Caitriona Brennan, Daniel McDonald, Tomasz Kosciolek, Scott T. Kelley, Bahar Behsaz, Matthew A. Jackson, Tanya T. Nguyen, Se Jin Song, Tim D. Spector, James Gaffney, Anupriya Tripathi, Elaine Wolfe, Alexey V. Melnik, Jeff Leach, Dilip V. Jeste, Luke R. Thompson, Larry Smarr, Adam Robbins-Pianka, Joshua Shorenstein, Jack A. Gilbert, Dan Knights, Emmanuel Montassier, James T. Morton, Shyamal D. Peddada, Antonio Gonzalez, Ashkaan K. Fahimipour, Austin D. Swafford, Rob Knight, Stefan Janssen, Curtis Huttenhower, Gail Ackermann, Greg Humphrey
Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unknown. Usi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b467e6fef6d6ba36b90ac16f6e6144a3
https://doi.org/10.1101/277970
https://doi.org/10.1101/277970
Autor:
Vincent Lombard, Michelle I. Smith, Bernard Henrissat, Alejandro Reyes, Brandi L. Cantarel, Rob Knight, Jiye Cheng, Dagmar Woebken, Will Van Treuren, Rudolf H. Scheffrahn, Gabriel M. Simon, Alfred M. Spormann, Henning Seedorf, Jeffrey I. Gordon, Nicholas W. Griffin, Vanessa K. Ridaura, Federico E. Rey, Adam Robbins-Pianka, Megan Pirrung, Luke K. Ursell
Publikováno v:
Cell, vol 159, iss 2
To study how microbes establish themselves in a mammalian gut environment, we colonized germ-free mice with microbial communities from human, zebrafish and termite guts, human skin and tongue, soil, and estuarine microbial mats. Bacteria from these f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::852762975d29e00b63f54def42c4ae47
Autor:
Joachim Frey, Anna Schnürer, Janet K. Jansson, Jack T. Pronk, Barth F. Smets, Rob Knight, Tjakko Abee, Thomas P. Curtis, Eddy J. Smid, Miguel Vicente, Adam Robbins-Pianka, Karsten Zengler, Jean-Marc Daran
Publikováno v:
Microbial Biotechnology. 6:3-16
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::61ef2998c8450d10b93c8f035e489841
https://doi.org/10.1111/1751-7915.12014
https://doi.org/10.1111/1751-7915.12014
Autor:
Bo Maxwell Stevens, Matthew T. Belus, Adam Robbins-Pianka, Gerard J. Allan, Andrew Krohn, Catherine A. Gehring
The diversity of complex microbial communities can be rapidly assessed by high-throughput DNA sequencing of marker gene (e.g., 16S) PCR amplicon pools, often yielding many thousands of DNA sequences per sample. However, analysis of such community amp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08ceddb39f1dd2d3def1c78ec62214aa
https://doi.org/10.7287/peerj.preprints.2196v2
https://doi.org/10.7287/peerj.preprints.2196v2