Zobrazeno 1 - 10
of 32
pro vyhledávání: '"Adam R. Morris"'
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Merged Tuxedo Suite output for tumor data, combining the cuffdiff and cuffnorm tables by unique ENSEMBL identifier
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c89ddc770c1d3870a0bbe1a958be3c3
https://doi.org/10.1158/0008-5472.22418064
https://doi.org/10.1158/0008-5472.22418064
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Table S1: Output of ChromHMM and color key. Table S2: Enhancer counts. Table S3: Enhancer distribution. Table S4: Bivalent region counts.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ea0caa0bae4c95195c0b12e6e9af7ef
https://doi.org/10.1158/0008-5472.22418052.v1
https://doi.org/10.1158/0008-5472.22418052.v1
Autor:
Reuven Agami, Gerrit A. Meijer, Beatriz Carvalho, Anne S. Bolijn, Ran Elkon, Koos Rooijers, Begoña Diosdado, Arnold Bos, Adam R. Morris
PDF file - 155K, Sequencing statistics
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::471ec6c04b92cb180a8f95f03ee2cffd
https://doi.org/10.1158/1078-0432.22452593
https://doi.org/10.1158/1078-0432.22452593
Autor:
Reuven Agami, Gerrit A. Meijer, Beatriz Carvalho, Anne S. Bolijn, Ran Elkon, Koos Rooijers, Begoña Diosdado, Arnold Bos, Adam R. Morris
PDF file - 3.2MB, PAS_J values and p-values describing APA during colon cancer progression
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d962221e2d20543a8f372efb9438ba8
https://doi.org/10.1158/1078-0432.22452572
https://doi.org/10.1158/1078-0432.22452572
Autor:
Reuven Agami, Gerrit A. Meijer, Beatriz Carvalho, Anne S. Bolijn, Ran Elkon, Koos Rooijers, Begoña Diosdado, Arnold Bos, Adam R. Morris
PDF file - 87K, 3'PCR of proximal and distal PASs isoforms in relation to beta-actin. *p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::496b9032b12b23f6142510aa60fe45a2
https://doi.org/10.1158/1078-0432.22452581
https://doi.org/10.1158/1078-0432.22452581
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Glioblastoma multiforme (GBM) can be clustered by gene expression into four main subtypes associated with prognosis and survival, but enhancers and other gene-regulatory elements have not yet been identified in primary tumors. Here, we profiled six h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3230cdd38131a7dc194cdb3a89ac4275
https://doi.org/10.1158/0008-5472.c.6510018
https://doi.org/10.1158/0008-5472.c.6510018
Autor:
Reuven Agami, Gerrit A. Meijer, Beatriz Carvalho, Anne S. Bolijn, Ran Elkon, Koos Rooijers, Begoña Diosdado, Arnold Bos, Adam R. Morris
PDF file - 97K, Correlation between APA and mRNA abundance. Negative PAS_J values indicate 3'UTR shortening, and vice versa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c47c4d7c5d8b66de29914a35d2ecdc4
https://doi.org/10.1158/1078-0432.22452587
https://doi.org/10.1158/1078-0432.22452587
Autor:
Reuven Agami, Gerrit A. Meijer, Beatriz Carvalho, Anne S. Bolijn, Ran Elkon, Koos Rooijers, Begoña Diosdado, Arnold Bos, Adam R. Morris
PDF file - 580K, 3'PCR analysis of APA events in tissue subtypes. A=adenoma without chromosomal aberrations, Adenoma +Ab.=adenoma with chromosomal aberrations, MSS=microsatellite stable, MSI=microsatellite instable. *p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14ea39348417af23e433ecb4f0e16825
https://doi.org/10.1158/1078-0432.22452584
https://doi.org/10.1158/1078-0432.22452584
Autor:
Reuven Agami, Gerrit A. Meijer, Beatriz Carvalho, Anne S. Bolijn, Ran Elkon, Koos Rooijers, Begoña Diosdado, Arnold Bos, Adam R. Morris
PDF file - 24K
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c566e083811b6a63383751f3a54e4915
https://doi.org/10.1158/1078-0432.22452578
https://doi.org/10.1158/1078-0432.22452578
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Figure S1: Copy number alterations in GBM tumor genomes. Figure S2: Clustering of primary GBM tumors relative to GBM-derived cell lines. Figure S3: Gene expression over all 21 chromatin states in GBM tumors. Figure S4: Methylation over all identified
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2a4471dfea08b891516ab119f2b7bf3d
https://doi.org/10.1158/0008-5472.22418073.v1
https://doi.org/10.1158/0008-5472.22418073.v1