Zobrazeno 1 - 10
of 188
pro vyhledávání: '"Adam M, Deutschbauer"'
Autor:
Bradley W Biggs, Morgan N Price, Dexter Lai, Jasmine Escobedo, Yuridia Fortanel, Yolanda Y Huang, Kyoungmin Kim, Valentine V Trotter, Jennifer V Kuehl, Lauren M Lui, Romy Chakraborty, Adam M Deutschbauer, Adam P Arkin
Publikováno v:
Molecular Systems Biology, Vol 20, Iss 11, Pp 1207-1229 (2024)
Abstract Our ability to predict, control, or design biological function is fundamentally limited by poorly annotated gene function. This can be particularly challenging in non-model systems. Accordingly, there is motivation for new high-throughput me
Externí odkaz:
https://doaj.org/article/be2f0052335c41e5b844bbca96e0a1aa
Autor:
Yolanda Y. Huang, Morgan N. Price, Allison Hung, Omree Gal-Oz, Surya Tripathi, Christopher W. Smith, Davian Ho, Héloïse Carion, Adam M. Deutschbauer, Adam P. Arkin
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-17 (2024)
Abstract A mechanistic understanding of host-microbe interactions in the gut microbiome is hindered by poorly annotated bacterial genomes. While functional genomics can generate large gene-to-phenotype datasets to accelerate functional discovery, the
Externí odkaz:
https://doaj.org/article/6c26e2bd51264f1ca4e44d71b211f4aa
Autor:
Leslie A. Day, Hans K. Carlson, Dallas R. Fonseca, Adam P. Arkin, Morgan N. Price, Adam M. Deutschbauer, Kyle C. Costa
Publikováno v:
mBio, Vol 15, Iss 9 (2024)
ABSTRACT Archaea are widespread in the environment and play fundamental roles in diverse ecosystems; however, characterization of their unique biology requires advanced tools. This is particularly challenging when characterizing gene function. Here,
Externí odkaz:
https://doaj.org/article/f3bd2900f92a4e9f8162b51d66ec7fc8
Autor:
Hsiao-Han Lin, Marta Torres, Catharine A. Adams, Peter F. Andeer, Trenton K. Owens, Kateryna Zhalnina, Lauren K. Jabusch, Hans K. Carlson, Jennifer V. Kuehl, Adam M. Deutschbauer, Trent R. Northen, N. Louise Glass, Jenny C. Mortimer
Publikováno v:
Phytobiomes Journal, Vol 8, Iss 2, Pp 155-167 (2024)
Studying plant–microbe–soil interactions is challenging due to their high complexity and variability in natural ecosystems. While fabricated ecosystems provide opportunities to recapitulate aspects of these systems in reduced complexity and contr
Externí odkaz:
https://doaj.org/article/02cc55a873ae458cb6dce66df619debe
Autor:
Jennifer L. Goff, Elizabeth G. Szink, Konnor L. Durrence, Lauren M. Lui, Torben N. Nielsen, Jennifer V. Kuehl, Kristopher A. Hunt, John-Marc Chandonia, Jiawen Huang, Michael P. Thorgersen, Farris L. Poole, David A. Stahl, Romy Chakraborty, Adam M. Deutschbauer, Adam P. Arkin, Michael W. W. Adams
Publikováno v:
Environmental Microbiome, Vol 19, Iss 1, Pp 1-17 (2024)
Abstract Castellaniella species have been isolated from a variety of mixed-waste environments including the nitrate and multiple metal-contaminated subsurface at the Oak Ridge Reservation (ORR). Previous studies examining microbial community composit
Externí odkaz:
https://doaj.org/article/21d60b492778453a996873cc86d2594d
Autor:
Carlos Geert Pieter Voogdt, Surya Tripathi, Stefan Oliver Bassler, Saria A. McKeithen-Mead, Emma R. Guiberson, Alexandra Koumoutsi, Afonso Martins Bravo, Cullen Buie, Michael Zimmermann, Justin L. Sonnenburg, Athanasios Typas, Adam M. Deutschbauer, Anthony L. Shiver, Kerwyn Casey Huang
Publikováno v:
Cell Reports, Vol 43, Iss 1, Pp 113519- (2024)
Summary: The critical role of the intestinal microbiota in human health and disease is well recognized. Nevertheless, there are still large gaps in our understanding of the functions and mechanisms encoded in the genomes of most members of the gut mi
Externí odkaz:
https://doaj.org/article/f55492c84db847c78fb9dfafefb55708
Autor:
Surya Tripathi, Carlos Geert Pieter Voogdt, Stefan Oliver Bassler, Mary Anderson, Po-Hsun Huang, Nazgul Sakenova, Tümay Capraz, Sunit Jain, Alexandra Koumoutsi, Afonso Martins Bravo, Valentine Trotter, Michael Zimmerman, Justin L. Sonnenburg, Cullen Buie, Athanasios Typas, Adam M. Deutschbauer, Anthony L. Shiver, Kerwyn Casey Huang
Publikováno v:
Cell Reports, Vol 43, Iss 1, Pp 113517- (2024)
Summary: Randomly barcoded transposon mutant libraries are powerful tools for studying gene function and organization, assessing gene essentiality and pathways, discovering potential therapeutic targets, and understanding the physiology of gut bacter
Externí odkaz:
https://doaj.org/article/023823f8c8824e889806312e660b82aa
Autor:
José Manuel Villalobos-Escobedo, Maria Belen Mercado-Esquivias, Catharine Adams, W Berkeley Kauffman, Rex R Malmstrom, Adam M Deutschbauer, N Louise Glass
Publikováno v:
PLoS Genetics, Vol 19, Iss 8, p e1010909 (2023)
Trichoderma spp. are ubiquitous rhizosphere fungi capable of producing several classes of secondary metabolites that can modify the dynamics of the plant-associated microbiome. However, the bacterial-fungal mechanisms that mediate these interactions
Externí odkaz:
https://doaj.org/article/bb0aa897900a40b89a1951e1a446f67a
Autor:
Valentine V. Trotter, Maxim Shatsky, Morgan N. Price, Thomas R. Juba, Grant M. Zane, Kara B. De León, Erica L.-W. Majumder, Qin Gui, Rida Ali, Kelly M. Wetmore, Jennifer V. Kuehl, Adam P. Arkin, Judy D. Wall, Adam M. Deutschbauer, John-Marc Chandonia, Gareth P. Butland
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their damage to the petroleum industry, our molecular understanding of their
Externí odkaz:
https://doaj.org/article/698e9540197c469782ae475458a7cc15
Autor:
Kevin Aumiller, Robert Scheffler, Eric T Stevens, Zehra T Güvener, Emily Tung, Anna B Grimaldo, Hans K Carlson, Adam M Deutschbauer, Michiko E Taga, Maria L Marco, William B Ludington
Publikováno v:
PLoS ONE, Vol 18, Iss 10, p e0292585 (2023)
Lactobacilli and Acetobacter sp. are commercially important bacteria that often form communities in natural fermentations, including food preparations, spoilage, and in the digestive tract of the fruit fly Drosophila melanogaster. Communities of thes
Externí odkaz:
https://doaj.org/article/ebb62d8285df4acda069b959d76031cc