Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Adam Gudys"'
Autor:
Sebastian Deorowicz, Adam Gudyś
Publikováno v:
SoftwareX, Vol 14, Iss , Pp 100692- (2021)
Identification of genetic variants is of crucial importance in the forthcoming era of precision medicine. Since the majority of variant callers require mapping reads to a reference genome, the reliability of the latter is a key factor determining acc
Externí odkaz:
https://doaj.org/article/e3d603d8688a485690740a8c1bc59d2f
Autor:
Adam Gudyś, Sebastian Deorowicz
Publikováno v:
PLoS ONE, Vol 9, Iss 2, p e88901 (2014)
Multiple sequence alignment is a crucial task in a number of biological analyses like secondary structure prediction, domain searching, phylogeny, etc. MSAProbs is currently the most accurate alignment algorithm, but its effectiveness is obtained at
Externí odkaz:
https://doaj.org/article/f6f8ad4afe0e4f0582ae8b3fba31270e
Publikováno v:
Bioinformatics. 38:1447-1449
SummaryPHIST (Phage-Host Interaction Search Tool) predicts prokaryotic hosts of viruses from their genomic sequences. It improves host prediction accuracy at species level over current alignment-based tools (on average by 3 percentage points) as well
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2168a07389fc801fe18e0e93f520ca29
https://doi.org/10.1093/bioinformatics/btab837
https://doi.org/10.1093/bioinformatics/btab837
Autor:
Adam Gudys, Sebastian Deorowicz
Publikováno v:
SoftwareX, Vol 14, Iss, Pp 100692-(2021)
SummaryWhisper 2 is a short-read-mapping software providing superior quality of indel variant calling. Its running times place it among the fastest existing tools.Availability and Implementationhttps://github.com/refresh-bio/whisperContactsebastian.d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f270997d08a8968bce343bc388a4d284
https://doi.org/10.1016/j.softx.2021.100692
https://doi.org/10.1016/j.softx.2021.100692
Publikováno v:
Bioinformatics (Oxford, England). 35(1)
SummaryKmer-db is a new tool for estimating evolutionary relationship on the basis of k-mers extracted from genomes or sequencing reads. Thanks to an efficient data structure and parallel implementation, our software estimates distances between 40,71
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9be4bc109d28b5057d726b626bebbd75
https://pubmed.ncbi.nlm.nih.gov/29986074
https://pubmed.ncbi.nlm.nih.gov/29986074
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-13 (2017)
Abstract Background Survival analysis is an important element of reasoning from data. Applied in a number of fields, it has become particularly useful in medicine to estimate the survival rate of patients on the basis of their condition, examination
Externí odkaz:
https://doaj.org/article/b4c0064c7c6a4c5b9bcdd77d5afea76b