Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity.

Autor: Carol Chapman, Matthew Henry, Kimberly A Bishop-Lilly, Joy Awosika, Adam Briska, Ryan N Ptashkin, Trevor Wagner, Chythanya Rajanna, Hsinyi Tsang, Shannon L Johnson, Vishwesh P Mokashi, Patrick S G Chain, Shanmuga Sozhamannan

Publikováno v: PLoS ONE, Vol 10, Iss 3, p e0120311 (2015)

Historically, cholera outbreaks have been linked to V. cholerae O1 serogroup strains or its derivatives of the O37 and O139 serogroups. A genomic study on the 2010 Haiti cholera outbreak strains highlighted the putative role of non O1/non-O139 V. cho

Externí odkaz: https://doaj.org/article/e0753bc3d40f4573b26caf1b5115d4ca

Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups

Autor: Colin W. Dykes, Steven D. Lovrich, Adam Briska, Buffy Stahl, Emily B. Zentz, B. K. Duchateau, William A. Agger, John K. Henkhaus, Steven M. Callister, William R. Schwan, Trevor K. Wagner

Publikováno v: Microbiology

Optical maps were generated for 33 uropathogenic Escherichia coli (UPEC) isolates. For individual genomes, the NcoI restriction fragments aligned into a unique chromosome map for each individual isolate, which was then compared with the in silico res

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ebbb5e838cdb67991fa4906bbad9c689
https://doi.org/10.1099/mic.0.033977-0

Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli

Autor: Claudine Médigue, Joël Gaffé, Olivier Tenaillon, Stéphane Cruveiller, Richard E. Lenski, Jeffrey E. Barrick, Ryan Ptashkin, Dominique Schneider, Adam Briska, Daniel E. Deatherage, Colin Raeside

Publikováno v: mBio, Vol 5, Iss 5 (2014)
mBio

Large-scale rearrangements may be important in evolution because they can alter chromosome organization and gene expression in ways not possible through point mutations. In a long-term evolution experiment, twelve Escherichia coli populations have be

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d710ecb53b845fc255f4b30d8364a294
https://journals.asm.org/doi/10.1128/mBio.01377-14

Whole-genome shotgun optical mapping of rhodospirillum rubrum

Autor: Steve Goldstein, Gary P. Roberts, Dan Forrest, Alex Lim, Adam Briska, Michael Place, Alla Lapidus, Cliff Han, Christopher Churas, Yaoping Zhang, David C. Schwartz, Rod Runnheim, Shiguo Zhou, Susan Reslewic

Publikováno v: Reslewic, Susan; Zhou, Shiguo; Place, Mike; Zhang, Yaoping; Briska, Adam; Goldstein, Steve; et al.(2004). Whole-genome shotgun optical mapping of rhodospirillum rubrum. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/73g192dj

Rhodospirillum rubrum is a phototrophic purple nonsulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems and as a source of hydrogen and biodegradable plastic production. To better understand th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0df0a648e0abf9aaffeae11246450623
http://www.escholarship.org/uc/item/73g192dj