Zobrazeno 1 - 10
of 34
pro vyhledávání: '"Adair L. Borges"'
Autor:
Yue Clare Lou, Benjamin E. Rubin, Marie C. Schoelmerich, Kaden S. DiMarco, Adair L. Borges, Rachel Rovinsky, Leo Song, Jennifer A. Doudna, Jillian F. Banfield
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Abstract The early-life gut microbiome development has long-term health impacts and can be influenced by factors such as infant diet. Human milk oligosaccharides (HMOs), an essential component of breast milk that can only be metabolized by some benef
Externí odkaz:
https://doaj.org/article/a8df196bfbb6448790caa85a502b0e97
Autor:
Polina Muzyukina, Anton Shkaruta, Noemi M. Guzman, Jessica Andreani, Adair L. Borges, Joseph Bondy-Denomy, Anna Maikova, Ekaterina Semenova, Konstantin Severinov, Olga Soutourina
Publikováno v:
mSphere, Vol 8, Iss 6 (2023)
ABSTRACTCRISPR-Cas systems provide prokaryotic hosts with adaptive immunity against mobile genetic elements. Many bacteriophages encode anti-CRISPR (Acr) proteins that inhibit host defense. The identification of Acr proteins is challenging due to the
Externí odkaz:
https://doaj.org/article/71128c6ead1449c1a691bf90e99cb7e8
Autor:
Samantha L. Peters, Adair L. Borges, Richard J. Giannone, Michael J. Morowitz, Jillian F. Banfield, Robert L. Hettich
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-7 (2022)
Previous bioinformatic analyses have indicated that bacteriophages can use genetic codes different from those of their host bacteria. Here, Peters et al. use metaproteomics to provide experimental evidence of reassignment of stop codon TAG to glutami
Externí odkaz:
https://doaj.org/article/cab0dea2128d4a5ead2a5e0cb6ee48a9
Autor:
Ayal B. Gussow, Allyson E. Park, Adair L. Borges, Sergey A. Shmakov, Kira S. Makarova, Yuri I. Wolf, Joseph Bondy-Denomy, Eugene V. Koonin
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
CRISPR-Cas is a host adaptive immunity system and viruses harbor diverse anti-CRISPR proteins (Acrs). Here, the authors develop a random forest machine-learning approach to predict Acrs, identifying 2500 candidate Acr families, which expand the curre
Externí odkaz:
https://doaj.org/article/ebeb6afe4a8347318cf5044cb7657ab8
Autor:
Marco A. Crisci, Lin-Xing Chen, Audra E. Devoto, Adair L. Borges, Nicola Bordin, Rohan Sachdeva, Adrian Tett, Allison M. Sharrar, Nicola Segata, Francesco Debenedetti, Mick Bailey, Rachel Burt, Rhiannon M. Wood, Lewis J. Rowden, Paula M. Corsini, Steven van Winden, Mark A. Holmes, Shufei Lei, Jillian F. Banfield, Joanne M. Santini
Publikováno v:
iScience, Vol 24, Iss 8, Pp 102875- (2021)
Summary: Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in Prevotella in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distributi
Externí odkaz:
https://doaj.org/article/6fb802688c864ef6b3a40e869846f788
Publikováno v:
mBio, Vol 5, Iss 1 (2014)
ABSTRACT Toxoplasma gondii is a human obligate intracellular parasite that has infected over 20% of the world population and has a vast intermediate host range compared to those of its nearest relatives Neospora caninum and Hammondia hammondi. While
Externí odkaz:
https://doaj.org/article/c03fb08157ce4ebf9c7f0f4fb93726b7
Autor:
Adair L. Borges
I'm sharing the genomes (.fa) and genbanks (.gbk) files for two phages that we isolated from cheese: Serratia phage 92A1 andArthrobacter phage 1191A.Serratia phage 92A1 has aprobable arabinosyl-hydroxymethylation modification of cytosine. The host st
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::469fb0a8b2825eb93830707a78d8431c
Autor:
Polina Muzyukina, Anton Shkaruta, Noemi M. Guzman, Jessica Andreani, Adair L. Borges, Joseph Bondy-Denomy, Anna Maikova, Ekaterina Semenova, Konstantin Severinov, Olga Soutourina
CRISPR-Cas systems provide their prokaryotic hosts with adaptive immunity against mobile genetic elements. Many bacteriophages encode anti-CRISPR (Acr) proteins that inhibit host defense. The identification of Acr proteins is challenging due to their
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::759b84590f2f6f64fb9a0ff5b907255a
https://doi.org/10.1101/2023.05.22.541795
https://doi.org/10.1101/2023.05.22.541795
Autor:
Yue Clare Lou, Benjamin E. Rubin, Marie C. Schoelmerich, Kaden DiMarco, Adair L. Borges, Rachel Rovinsky, Leo Song, Jennifer A. Doudna, Jillian F. Banfield
Human milk oligosaccharides (HMOs) ensure proper infant gut microbiome establishment. Isolate studies have revealed the genetic basis for HMO metabolism, but they exclude the possibility of HMO assimilation via synergistic interactions involving mult
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::00e040126269a6e48317f36815a9ef3c
https://doi.org/10.1101/2023.03.10.532136
https://doi.org/10.1101/2023.03.10.532136
Autor:
Adair L. Borges, Yue Clare Lou, Rohan Sachdeva, Basem Al-Shayeb, Petar I. Penev, Alexander L. Jaffe, Shufei Lei, Joanne M. Santini, Jillian F. Banfield
Publikováno v:
Nature microbiology, vol 7, iss 6
Bacteriophages (phages) are obligate parasites that use host bacterial translation machinery to produce viral proteins. However, some phages have alternative genetic codes with reassigned stop codons that are predicted to be incompatible with bacteri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f71f025e172baeb901567d441423ee2
https://escholarship.org/uc/item/9415j2sq
https://escholarship.org/uc/item/9415j2sq