Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium

Autor: Gina Chaput, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Meghan Whalen, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, I-Min Chen, Dimitrios Stamatis, T. B. K Reddy, Ronan O’Malley, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Tijana Glavina del Rio, Kristen M. DeAngelis

Publikováno v: Microbiology Spectrum, Vol 10, Iss 3 (2022)

ABSTRACT Novel bacterial isolates with the capabilities of lignin depolymerization, catabolism, or both, could be pertinent to lignocellulosic biofuel applications. In this study, we aimed to identify anaerobic bacteria that could address the economi

Externí odkaz: https://doaj.org/article/0e0ea69887504ac0867efc6dd09ece02

Pangenomes reveal genomic signatures of microbial adaptation to chronic soil warming

Autor: Mallory J. Choudoir, Achala Narayanan, Damayanti Rodriguez-Ramos, Rachel Simoes, Alon Efroni, Abigail Sondrini, Kristen M. DeAngelis

Evolutionary responses to anthropogenic climate change are irreversible and largely uncaptured by climate models. Below-ground carbon transformations represent an important natural mitigation solution, but novel adaptive traits may alter microbial cl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::85f51c13368033f5e78e19ef71a17551
https://doi.org/10.1101/2023.03.16.532972

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

Autor: Achala Narayanan, Nicole Shapiro, Neha Varghese, Lani DeDiego, Marcel Huntemann, Alicia Clum, Dimitrios Stamatis, Wing Yin Tam, Kristen M. DeAngelis, I-Min Chen, Jacob Ford, Natalia Ivanova, Meghan Whalen, Natalia Mikhailova, T. B. K. Reddy, Gina Chaput, Chris Daum, Manoj Pillay, Tijana Glavina del Rio, Ronan C. O'Malley, Nikos C. Kyrpides, Krishnaveni Palaniappan, Alex Spunde, Tanja Woyke

Publikováno v: Microbiology resource announcements, vol 8, iss 18
Chaput, Gina; Ford, Jacob; DeDiego, Lani; Narayanan, Achala; Tam, Wing Yin; Whalen, Meghan; et al.(2019). Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.. Microbiology resource announcements, 8(18). doi: 10.1128/MRA.00409-19. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/82v1r3sn
Microbiology Resource Announcements

The complete genome sequence of the gammaproteobacterial isolate Serratia quinivorans 124R consists of 5 Mb over 2 scaffolds and a G+C content of 52.85%. Genes relating to aromatic metabolism reflect its isolation on organosolv lignin as a sole carbo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::685363ce84531578a5d673106c9c4867
https://doi.org/10.1128/mra.00409-19

Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long‐term warming.

Autor: Domeignoz‐Horta, Luiz A., Pold, Grace, Erb, Hailey, Sebag, David, Verrecchia, Eric, Northen, Trent, Louie, Katherine, Eloe‐Fadrosh, Emiley, Pennacchio, Christa, Knorr, Melissa A., Frey, Serita D., Melillo, Jerry M., DeAngelis, Kristen M.

Publikováno v: Global Change Biology; Mar2023, Vol. 29 Issue 6, p1574-1590, 17p