Zobrazeno 1 - 10
of 27
pro vyhledávání: '"Aaron McGeever"'
Autor:
Guillaume Le Treut, Greg Huber, Mason Kamb, Kyle Kawagoe, Aaron McGeever, Jonathan Miller, Reuven Pnini, Boris Veytsman, David Yllanes
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-10 (2022)
Abstract Propagation of an epidemic across a spatial network of communities is described by a variant of the SIR model accompanied by an intercommunity infectivity matrix. This matrix is estimated from fluxes between communities, obtained from cell-p
Externí odkaz:
https://doaj.org/article/0d97e7bc50a6480683fbc88819f05473
Autor:
Paula Hayakawa Serpa, Xianding Deng, Mazin Abdelghany, Emily Crawford, Katherine Malcolm, Saharai Caldera, Monica Fung, Aaron McGeever, Katrina L. Kalantar, Amy Lyden, Rajani Ghale, Thomas Deiss, Norma Neff, Steven A. Miller, Sarah B. Doernberg, Charles Y. Chiu, Joseph L. DeRisi, Carolyn S. Calfee, Charles R. Langelier
Publikováno v:
Genome Medicine, Vol 14, Iss 1, Pp 1-12 (2022)
Abstract Background Antimicrobial resistance (AMR) is rising at an alarming rate and complicating the management of infectious diseases including lower respiratory tract infections (LRTI). Metagenomic next-generation sequencing (mNGS) is a recently e
Externí odkaz:
https://doaj.org/article/0fb98aa80e5743e49c981617d04d8d51
Autor:
Sheng Wang, Angela Oliveira Pisco, Aaron McGeever, Maria Brbic, Marinka Zitnik, Spyros Darmanis, Jure Leskovec, Jim Karkanias, Russ B. Altman
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-11 (2021)
Classifying cells into unseen cell types remains challenging in scRNA-seq analysis. Here we show that Cell Ontology enables an accurate classification of unseen cell types through considering the cell type relationships in the Cell Ontology graph.
Externí odkaz:
https://doaj.org/article/1d09fe5933a6428fb050655243e85aa0
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Random walkers on a two-dimensional square lattice are used to explore the spatio-temporal growth of an epidemic. We have found that a simple random-walk system generates non-trivial dynamics compared with traditional well-mixed models. Phas
Externí odkaz:
https://doaj.org/article/22d866b7c9724cea9da6866d2e511a04
Autor:
Emily D Crawford, Irene Acosta, Vida Ahyong, Erika C Anderson, Shaun Arevalo, Daniel Asarnow, Shannon Axelrod, Patrick Ayscue, Camillia S Azimi, Caleigh M Azumaya, Stefanie Bachl, Iris Bachmutsky, Aparna Bhaduri, Jeremy Bancroft Brown, Joshua Batson, Astrid Behnert, Ryan M Boileau, Saumya R Bollam, Alain R Bonny, David Booth, Michael Jerico B Borja, David Brown, Bryan Buie, Cassandra E Burnett, Lauren E Byrnes, Katelyn A Cabral, Joana P Cabrera, Saharai Caldera, Gabriela Canales, Gloria R Castañeda, Agnes Protacio Chan, Christopher R Chang, Arthur Charles-Orszag, Carly Cheung, Unseng Chio, Eric D Chow, Y Rose Citron, Allison Cohen, Lillian B Cohn, Charles Chiu, Mitchel A Cole, Daniel N Conrad, Angela Constantino, Andrew Cote, Tre'Jon Crayton-Hall, Spyros Darmanis, Angela M Detweiler, Rebekah L Dial, Shen Dong, Elias M Duarte, David Dynerman, Rebecca Egger, Alison Fanton, Stacey M Frumm, Becky Xu Hua Fu, Valentina E Garcia, Julie Garcia, Christina Gladkova, Miriam Goldman, Rafael Gomez-Sjoberg, M Grace Gordon, James C R Grove, Shweta Gupta, Alexis Haddjeri-Hopkins, Pierce Hadley, John Haliburton, Samantha L Hao, George Hartoularos, Nadia Herrera, Melissa Hilberg, Kit Ying E Ho, Nicholas Hoppe, Shayan Hosseinzadeh, Conor J Howard, Jeffrey A Hussmann, Elizabeth Hwang, Danielle Ingebrigtsen, Julia R Jackson, Ziad M Jowhar, Danielle Kain, James Y S Kim, Amy Kistler, Oriana Kreutzfeld, Jessie Kulsuptrakul, Andrew F Kung, Charles Langelier, Matthew T Laurie, Lena Lee, Kun Leng, Kristoffer E Leon, Manuel D Leonetti, Sophia R Levan, Sam Li, Aileen W Li, Jamin Liu, Heidi S Lubin, Amy Lyden, Jennifer Mann, Sabrina Mann, Gorica Margulis, Diana M Marquez, Bryan P Marsh, Calla Martyn, Elizabeth E McCarthy, Aaron McGeever, Alexander F Merriman, Lauren K Meyer, Steve Miller, Megan K Moore, Cody T Mowery, Tanzila Mukhtar, Lusajo L Mwakibete, Noelle Narez, Norma F Neff, Lindsay A Osso, Diter Oviedo, Suping Peng, Maira Phelps, Kiet Phong, Peter Picard, Lindsey M Pieper, Neha Pincha, Angela Oliveira Pisco, Angela Pogson, Sergei Pourmal, Robert R Puccinelli, Andreas S Puschnik, Elze Rackaityte, Preethi Raghavan, Madhura Raghavan, James Reese, Joseph M Replogle, Hanna Retallack, Helen Reyes, Donald Rose, Marci F Rosenberg, Estella Sanchez-Guerrero, Sydney M Sattler, Laura Savy, Stephanie K See, Kristin K Sellers, Paula Hayakawa Serpa, Maureen Sheehy, Jonathan Sheu, Sukrit Silas, Jessica A Streithorst, Jack Strickland, Doug Stryke, Sara Sunshine, Peter Suslow, Renaldo Sutanto, Serena Tamura, Michelle Tan, Jiongyi Tan, Alice Tang, Cristina M Tato, Jack C Taylor, Iliana Tenvooren, Erin M Thompson, Edward C Thornborrow, Eric Tse, Tony Tung, Marc L Turner, Victoria S Turner, Rigney E Turnham, Mary J Turocy, Trisha V Vaidyanathan, Ilia D Vainchtein, Manu Vanaerschot, Sara E Vazquez, Anica M Wandler, Anne Wapniarski, James T Webber, Zara Y Weinberg, Alexandra Westbrook, Allison W Wong, Emily Wong, Gajus Worthington, Fang Xie, Albert Xu, Terrina Yamamoto, Ying Yang, Fauna Yarza, Yefim Zaltsman, Tina Zheng, Joseph L DeRisi
Publikováno v:
PLoS Pathogens, Vol 16, Iss 10, p e1008966 (2020)
Externí odkaz:
https://doaj.org/article/3bbb68a359bd42bc9db996dc6d89e140
Publikováno v:
Frontiers in Immunology, Vol 10 (2019)
Phenotypic screening of antigen-specific antibodies in human blood is a common diagnostic test for infectious agents and a correlate of protection after vaccination. In addition to long-lived antibody secreting plasma cells residing in the bone marro
Externí odkaz:
https://doaj.org/article/ae9e3d281c574833b17e00455aff3b1e
Autor:
Kim Thrane, Mårten C.G. Winge, Hongyu Wang, Larry Chen, Margaret G. Guo, Alma Andersson, Xesús M. Abalo, Xue Yang, Daniel S. Kim, Sophia K. Longo, Brian Y. Soong, Jordan M. Meyers, David L. Reynolds, Aaron McGeever, Deniz Demircioglu, Dan Hasson, Reza Mirzazadeh, Adam J. Rubin, Gordon H. Bae, Jim Karkanias, Kerri Rieger, Joakim Lundeberg, Andrew L. Ji
Publikováno v:
Journal of Investigative Dermatology.
Autor:
Angela Oliveira Pisco, Russ B. Altman, Marinka Zitnik, Jure Leskovec, Aaron McGeever, Spyros Darmanis, Jim Karkanias, Sheng Wang, Maria Brbic
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-11 (2021)
Nature Communications
Nature Communications
Single cell technologies are rapidly generating large amounts of data that enables us to understand biological systems at single-cell resolution. However, joint analysis of datasets generated by independent labs remains challenging due to a lack of c
Autor:
Saba Nafees, Venkata Naga Pranathi Vemuri, Miles Woollacott, Ahmet Can Solak, Phoenix Logan, Aaron McGeever, Olivia Yoo, Sean H. Rice
MotivationAn important goal in sequence analysis is to understand how parts of DNA, RNA, or protein sequences interact with each other and to predict how these interactions result in given phenotypes. Mapping phenotypes onto underlying sequence space
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7da94094f3900c6ea174477a7536a359
https://doi.org/10.1101/2022.09.14.506443
https://doi.org/10.1101/2022.09.14.506443
Autor:
Paula Hayakawa, Serpa, Xianding, Deng, Mazin, Abdelghany, Emily, Crawford, Katherine, Malcolm, Saharai, Caldera, Monica, Fung, Aaron, McGeever, Katrina L, Kalantar, Amy, Lyden, Rajani, Ghale, Thomas, Deiss, Norma, Neff, Steven A, Miller, Sarah B, Doernberg, Charles Y, Chiu, Joseph L, DeRisi, Carolyn S, Calfee, Charles R, Langelier
Publikováno v:
Genome medicine, vol 14, iss 1
Background Antimicrobial resistance (AMR) is rising at an alarming rate and complicating the management of infectious diseases including lower respiratory tract infections (LRTI). Metagenomic next-generation sequencing (mNGS) is a recently establishe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a50c7fe92464144b030a381faa3893f
https://escholarship.org/uc/item/2nx6b55c
https://escholarship.org/uc/item/2nx6b55c