Zobrazeno 1 - 10
of 41
pro vyhledávání: '"Aaron M. Berlin"'
Autor:
Krista Hu, Abel Licon, Aaron M Berlin, Erroll H. Rueckert, Valentina Nardi, Abner Louissaint, Maggie Y Pontius, Briana Hudson, Rory Crotty, Kristen E. Stevenson, Matt Rodenbaugh, Josh Haimes, Russell J.H. Ryan, A. John Iafrate, Aliyah R. Sohani, Heather Ann Brauer
Publikováno v:
Am J Clin Pathol
Objectives Diffuse large B-cell lymphoma (DLBCL) is an aggressive non-Hodgkin lymphoma with a heterogenous genetic landscape that can require multiple assays to characterize. We reviewed a 1-step RNA-based assay to determine cell of origin (COO), det
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ecbc2a46753767ffe0f261f747cf2db
https://europepmc.org/articles/PMC8244124/
https://europepmc.org/articles/PMC8244124/
Autor:
Matthew R Henn, Christian L Boutwell, Patrick Charlebois, Niall J Lennon, Karen A Power, Alexander R Macalalad, Aaron M Berlin, Christine M Malboeuf, Elizabeth M Ryan, Sante Gnerre, Michael C Zody, Rachel L Erlich, Lisa M Green, Andrew Berical, Yaoyu Wang, Monica Casali, Hendrik Streeck, Allyson K Bloom, Tim Dudek, Damien Tully, Ruchi Newman, Karen L Axten, Adrianne D Gladden, Laura Battis, Michael Kemper, Qiandong Zeng, Terrance P Shea, Sharvari Gujja, Carmen Zedlack, Olivier Gasser, Christian Brander, Christoph Hess, Huldrych F Günthard, Zabrina L Brumme, Chanson J Brumme, Suzane Bazner, Jenna Rychert, Jake P Tinsley, Ken H Mayer, Eric Rosenberg, Florencia Pereyra, Joshua Z Levin, Sarah K Young, Heiko Jessen, Marcus Altfeld, Bruce W Birren, Bruce D Walker, Todd M Allen
Publikováno v:
PLoS Pathogens, Vol 8, Iss 3, p e1002529 (2012)
Deep sequencing technologies have the potential to transform the study of highly variable viral pathogens by providing a rapid and cost-effective approach to sensitively characterize rapidly evolving viral quasispecies. Here, we report on a high-thro
Externí odkaz:
https://doaj.org/article/7846f6a69b894bfaae962b545cdfe22c
Autor:
Matthew R Henn, Matthew B Sullivan, Nicole Stange-Thomann, Marcia S Osburne, Aaron M Berlin, Libusha Kelly, Chandri Yandava, Chinnappa Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah K Young, Chad Nusbaum, Bruce W Birren, Sallie W Chisholm
Publikováno v:
PLoS ONE, Vol 5, Iss 2, p e9083 (2010)
BACKGROUND: Bacterial viruses (phages) play a critical role in shaping microbial populations as they influence both host mortality and horizontal gene transfer. As such, they have a significant impact on local and global ecosystem function and human
Externí odkaz:
https://doaj.org/article/0c2d7d4a257e4b778143351ca99f221f
Autor:
Sébastien Rodrigue, Rex R Malmstrom, Aaron M Berlin, Bruce W Birren, Matthew R Henn, Sallie W Chisholm
Publikováno v:
PLoS ONE, Vol 4, Iss 9, p e6864 (2009)
Single-cell genome sequencing has the potential to allow the in-depth exploration of the vast genetic diversity found in uncultured microbes. We used the marine cyanobacterium Prochlorococcus as a model system for addressing important challenges faci
Externí odkaz:
https://doaj.org/article/306daedc374641d59e848cae9054c360
Autor:
Deborah I. Ritter, Arpad Danos, Chimene Kesserwan, Gordana Raca, Obi L. Griffith, Jennifer Lee, Linda B. Baughn, Ioannis S. Vlachos, Anna Lu, Nicole Park, Christian G. Reich, Liying Zhang, Georgina L Ryland, Kristy Lee, Albrecht Stenzinger, Alex H. Wagner, Panieh Terraf, Daniel L Cameron, Robert R. Freimuth, Dmitriy Sonkin, Michael Baudis, Aparna Pallavajjala, Catherine Rehder, Michele Ceccarelli, Gokce Toruner, Andrea Sboner, Ying S. Zou, Wan-Hsin Lin, Heather E. Williams, Aaron M Berlin, Sarah Rapisardo, Angshumoy Roy, Jason Saliba, Anna Tanska, Thomas Coard, Huiling Xu, Xinjie Xu, Xuelu Liu, Laveniya Satgunaseelan, Jie Liu, Peter Horak, Marilyn M. Li
Publikováno v:
Cancer Research. 81:449-449
Despite the well-established role of recurrent gene fusions as oncogenic drivers, current practices for characterizing and interpreting gene fusion events in clinical testing and in biomedical literature are inconsistent. From the conceptual definiti
Autor:
Mariko Forconi, Tereza Manousaki, Peter F. Stadler, Anna Maria Fausto, Simon D. M. White, Shigehiro Kuraku, Sumir Panji, Marcia Lara, Andreas Gnirke, Hervé Philippe, Shaohua Fan, Axel Meyer, Jean Nicolas Volff, Tsutomu Miyake, Sante Gnerre, Thorsten Burmester, Anne Nitsche, Igor Schneider, John J. Stegeman, Alison P. Lee, Kerstin Lindblad-Toh, Peter van Heusden, Chris T. Amemiya, Michael S. Campbell, Ettore Olmo, Vydianathan Ravi, Jason Turner-Maier, Denis Baurain, Gary W. Litman, Federica Di Palma, Nicolas Rohner, Manfred Schartl, Giuseppe Scapigliati, Oleg Simakov, Aaron M. Berlin, Barbara Picone, Ingo Braasch, Byrappa Venkatesh, David R. Nelson, Wilfried Haerty, Diana Tabbaa, M. Gail Mueller, Francesco Buonocore, Eric S. Lander, Gianluca De Moro, Uljana Hesse, Chris P. Ponting, Nathalie Feiner, Junaid Gamieldien, Clifford J. Tabin, Gregory L. Blatch, Tatsuya Ota, Steve Hoffmann, Maria Assunta Biscotti, John H. Postlethwait, Chris L. Organ, Jessica Alföldi, Lin Fan, Mark Robinson, Stephen M. J. Searle, Louise Williams, Mark E. Hahn, Sonja J. Prohaska, Jared V. Goldstone, Dariusz Przybylski, Iain MacCallum, Rosemary A. Dorrington, Joshua Z. Levin, Tatjana Sauka-Spengler, Kenta Sumiyama, Nil Ratan Saha, Henner Brinkmann, Jeremy Johnson, John P. Cannon, Filipe J. Ribeiro, Marco Gerdol, David B. Jaffe, Adriana Canapa, Hakim Tafer, Marco Barucca, Mark Yandell, Evan Mauceli, Alan Christoffels, Sibel I. Karchner, Adrienne L. Edkins, J. Joshua Smith, Bronwen Aken, Neil H. Shubin, Ted Sharpe, Domitille Chalopin, Alberto Pallavicini
Publikováno v:
Nature
Nature, Nature Publishing Group, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
Nature 7445 (496), 311-316. (2013)
Nature, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
ResearcherID
Nature, Nature Publishing Group, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
Nature 7445 (496), 311-316. (2013)
Nature, 2013, 496 (7445), pp.311-316. ⟨10.1038/nature12027⟩
ResearcherID
Acquisition and storage of Latimeria chalumnae samples was supported by grants from the African Coelacanth Ecosystem Programme of the South African National Department of Science and Technology. Generation of the Latimeria chalumnae and Protopterus a
Autor:
Aaron M. Berlin, Matthew Z. Anderson, Diego Martinez, Christina A. Cuomo, Judith Berman, Qiandong Zeng, Matthew P. Hirakawa, Joshua M. Greenberg, Richard J. Bennett, Joshua M. Wang, Ethan Zisson, Sharvari Gujja, Sharadha Sakthikumar
Publikováno v:
Genome Research. 25:413-425
Candida albicans is a commensal fungus of the human gastrointestinal tract and a prevalent opportunistic pathogen. To examine diversity within this species, extensive genomic and phenotypic analyses were performed on 21 clinical C. albicans isolates.
Autor:
Barbara A. Weir, Gad Getz, Jesse S. Boehm, Yulia Zektser, Lihua Zou, Pankaj K. Agarwalla, Gavin P. Dunn, Joyce F. Liu, Hiu Wing Cheung, Alison M. Karst, Michelle S. Hirsch, Ronny Drapkin, Rameen Beroukhim, William C. Hahn, Aaron M. Berlin, David E. Root, Francisca Vazquez, Sapana R. Thomas
Publikováno v:
Proceedings of the National Academy of Sciences. 111:1102-1107
High-grade serous ovarian cancers are characterized by widespread recurrent copy number alterations. Although some regions of copy number change harbor known oncogenes and tumor suppressor genes, the genes targeted by the majority of amplified or del
Autor:
James K. Hane, Wade H. Holman, Chandri Yandava, Barbara Robbertse, B. Gillian Turgeon, Stephen B. Goodwin, Melania Figueroa, Qiandong Zeng, Richard P. Oliver, Joel Martin, Shiguo Zhou, Wendy Schackwitz, Igor V. Grigoriev, Joseph W. Spatafora, Li-Jun Ma, David C. Schwartz, Sarah Young, Braham Dhillon, Iovanna Pandelova, Bernard Henrissat, Larry J. Wilhelm, Chinnappa D. Kodira, Aaron M. Berlin, Michael Freitag, Lynda M. Ciuffetti, Viola A. Manning
Publikováno v:
G3: Genes|Genomes|Genetics
Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham; Wilhelm, Larry J.; Goodwin, Stephen B.; Berlin, Aaron M.; et al.(2013). Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence. G3 Genes Genomes Genetics. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1693d1w4
Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham; Wilhelm, Larry J.; Goodwin, Stephen B.; Berlin, Aaron M.; et al.(2013). Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence. G3 Genes Genomes Genetics. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1693d1w4
Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of ho
Autor:
Andreas Gnirke, Gad Getz, Sarah Young, Na Li, David B. Jaffe, Terrance Shea, Iain MacCallum, Louise Williams, Chad Nusbaum, Michael S. Lawrence, Aaron M. Berlin, Diana Tabbaa, Yotam Drier
Publikováno v:
Genome Research. 22:2241-2249
Eliminating the bacterial cloning step has been a major factor in the vastly improved efficiency of massively parallel sequencing approaches. However, this also has made it a technical challenge to produce the modern equivalent of the Fosmid- or BAC-