Zobrazeno 1 - 10
of 151
pro vyhledávání: '"Aaron E. Darling"'
Autor:
Barbara P. Brito, Melinda J. Frost, Kay Anantanawat, Frederick Jaya, Tony Batterham, Steven P. Djordjevic, Wei-Shan Chang, Edward C. Holmes, Aaron E. Darling, Peter D. Kirkland
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-17 (2023)
Abstract Background Bovine respiratory disease (BRD) is one of the most common diseases in intensively managed cattle, often resulting in high morbidity and mortality. Although several pathogens have been isolated and extensively studied, the complet
Externí odkaz:
https://doaj.org/article/4e595b710bd54822b1e56bab12ea0165
Autor:
Christopher Quince, Sergey Nurk, Sebastien Raguideau, Robert James, Orkun S. Soyer, J. Kimberly Summers, Antoine Limasset, A. Murat Eren, Rayan Chikhi, Aaron E. Darling
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-34 (2021)
Abstract We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from multiple metagenome samples. STRONG performs coassembly, and binning into metagenome assembled genomes (MAGs), and stores the coassembly graph
Externí odkaz:
https://doaj.org/article/c74ea889eddf4483a41b363af8e7877a
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and recons
Externí odkaz:
https://doaj.org/article/6319ba8e68474bc9b3176b9f70701619
Autor:
Priyanka Hastak, Mathieu Fourment, Aaron E. Darling, Thomas Gottlieb, Elaine Cheong, John Merlino, Garry S. A. Myers, Steven P. Djordjevic, Piklu Roy Chowdhury
Publikováno v:
Emerging Microbes and Infections, Vol 9, Iss 1, Pp 1780-1792 (2020)
ABSTRACTThe H30Rx subclade of Escherichia coli ST131 is a clinically important, globally dispersed pathogenic lineage that typically displays resistance to fluoroquinolones and extended spectrum β-lactams. Isolates EC233 and EC234, variants of ST131
Externí odkaz:
https://doaj.org/article/a98f081aa3ce498eb418609a94cf5145
High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei
Autor:
Leigh G. Monahan, Matthew Z. DeMaere, Max L. Cummins, Steven P. Djordjevic, Piklu Roy Chowdhury, Aaron E. Darling
Publikováno v:
Gut Pathogens, Vol 11, Iss 1, Pp 1-6 (2019)
Abstract Background Enterobacter hormaechei is an important emerging pathogen and a key member of the highly diverse Enterobacter cloacae complex. E. hormaechei strains can persist and spread in nosocomial environments, and often exhibit resistance t
Externí odkaz:
https://doaj.org/article/8df681757b60417a8c628699895d62ba
Autor:
Matthew Z. DeMaere, Aaron E. Darling
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-16 (2019)
Abstract Most microbes cannot be easily cultured, and metagenomics provides a means to study them. Current techniques aim to resolve individual genomes from metagenomes, so-called metagenome-assembled genomes (MAGs). Leading approaches depend upon ti
Externí odkaz:
https://doaj.org/article/a253eedd2a4344cf865831a878298d17
Autor:
Adrian Fritz, Peter Hofmann, Stephan Majda, Eik Dahms, Johannes Dröge, Jessika Fiedler, Till R. Lesker, Peter Belmann, Matthew Z. DeMaere, Aaron E. Darling, Alexander Sczyrba, Andreas Bremges, Alice C. McHardy
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-12 (2019)
Abstract Background Shotgun metagenome data sets of microbial communities are highly diverse, not only due to the natural variation of the underlying biological systems, but also due to differences in laboratory protocols, replicate numbers, and sequ
Externí odkaz:
https://doaj.org/article/691fffe684ce4951892d70988eef06af
Autor:
Mathieu Fourment, Aaron E. Darling
Publikováno v:
PeerJ, Vol 7, p e8272 (2019)
Recent advances in statistical machine learning techniques have led to the creation of probabilistic programming frameworks. These frameworks enable probabilistic models to be rapidly prototyped and fit to data using scalable approximation methods su
Externí odkaz:
https://doaj.org/article/feb9c5415b9242268df4489e681f9b01
Autor:
Ania T. Deutscher, Catherine M. Burke, Aaron E. Darling, Markus Riegler, Olivia L. Reynolds, Toni A. Chapman
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-22 (2018)
Abstract Background Gut microbiota affects tephritid (Diptera: Tephritidae) fruit fly development, physiology, behavior, and thus the quality of flies mass-reared for the sterile insect technique (SIT), a target-specific, sustainable, environmentally
Externí odkaz:
https://doaj.org/article/8a1121a9d4074bbc85797853511e3806
Autor:
Daniel R. Bogema, Melinda L. Micallef, Michael Liu, Matthew P. Padula, Steven P. Djordjevic, Aaron E. Darling, Cheryl Jenkins
Publikováno v:
BMC Genomics, Vol 19, Iss 1, Pp 1-15 (2018)
Abstract Background Theileria orientalis (Apicomplexa: Piroplasmida) has caused clinical disease in cattle of Eastern Asia for many years and its recent rapid spread throughout Australian and New Zealand herds has caused substantial economic losses t
Externí odkaz:
https://doaj.org/article/a6dd442a4fb1428780e95bec85ea430c