Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Aaron Darling"'
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 4, p e1011084 (2023)
Bayesian inference for phylogenetics is a gold standard for computing distributions of phylogenies. However, Bayesian phylogenetics faces the challenging computational problem of moving throughout the high-dimensional space of trees. Fortunately, hyp
Externí odkaz:
https://doaj.org/article/c6547e10b215476e8dd075736843c91d
Autor:
Allen Van Deynze, Pablo Zamora, Pierre-Marc Delaux, Cristobal Heitmann, Dhileepkumar Jayaraman, Shanmugam Rajasekar, Danielle Graham, Junko Maeda, Donald Gibson, Kevin D Schwartz, Alison M Berry, Srijak Bhatnagar, Guillaume Jospin, Aaron Darling, Richard Jeannotte, Javier Lopez, Bart C Weimer, Jonathan A Eisen, Howard-Yana Shapiro, Jean-Michel Ané, Alan B Bennett
Publikováno v:
PLoS Biology, Vol 16, Iss 8, p e2006352 (2018)
Plants are associated with a complex microbiota that contributes to nutrient acquisition, plant growth, and plant defense. Nitrogen-fixing microbial associations are efficient and well characterized in legumes but are limited in cereals, including ma
Externí odkaz:
https://doaj.org/article/e17edba4693841a9895eed26d7e3017f
Autor:
Melissa Gardiner, Mauro Vicaretti, Jill Sparks, Sunaina Bansal, Stephen Bush, Michael Liu, Aaron Darling, Elizabeth Harry, Catherine M. Burke
Publikováno v:
PeerJ, Vol 5, p e3543 (2017)
Background Type II diabetes is a chronic health condition which is associated with skin conditions including chronic foot ulcers and an increased incidence of skin infections. The skin microbiome is thought to play important roles in skin defence and
Externí odkaz:
https://doaj.org/article/efc7f6e3ba2a441b993160af35c860d0
Autor:
Michael Liu, Aaron Darling
Publikováno v:
F1000Research, Vol 4 (2015)
We review currently available technologies for deconvoluting metagenomic data into individual genomes that represent populations, strains, or genotypes present in the community. An evaluation of chromosome conformation capture (3C) and related techni
Externí odkaz:
https://doaj.org/article/89eb537be459409098e00d147929fd24
Autor:
Atiqul Islam, Maurizio Labbate, Steven P. Djordjevic, Munirul Alam, Aaron Darling, Jacqueline Melvold, Andrew J. Holmes, Fatema T. Johura, Alejandro Cravioto, Ian G. Charles, H. W. Stokes
Publikováno v:
Open Biology, Vol 3, Iss 2 (2013)
Of the 200+ serogroups of Vibrio cholerae, only O1 or O139 strains are reported to cause cholera, and mostly in endemic regions. Cholera outbreaks elsewhere are considered to be via importation of pathogenic strains. Using established animal models,
Externí odkaz:
https://doaj.org/article/db18fd14af80453e879a3fb143c329ea
Autor:
Hinsby Cadillo-Quiroz, Xavier Didelot, Nicole L Held, Alfa Herrera, Aaron Darling, Michael L Reno, David J Krause, Rachel J Whitaker
Publikováno v:
PLoS Biology, Vol 10, Iss 2, p e1001265 (2012)
Despite a growing appreciation of their vast diversity in nature, mechanisms of speciation are poorly understood in Bacteria and Archaea. Here we use high-throughput genome sequencing to identify ongoing speciation in the thermoacidophilic Archaeon S
Externí odkaz:
https://doaj.org/article/c4029cd76eb944d6beba2e2efbf9089f
Autor:
Erin A Lynch, Morgan G I Langille, Aaron Darling, Elizabeth G Wilbanks, Caitlin Haltiner, Katie S Y Shao, Michael O Starr, Clotilde Teiling, Timothy T Harkins, Robert A Edwards, Jonathan A Eisen, Marc T Facciotti
Publikováno v:
PLoS ONE, Vol 7, Iss 7, p e41389 (2012)
We report the sequencing of seven genomes from two haloarchaeal genera, Haloferax and Haloarcula. Ease of cultivation and the existence of well-developed genetic and biochemical tools for several diverse haloarchaeal species make haloarchaea a model
Externí odkaz:
https://doaj.org/article/dc3fbd12bad04a398d3678030f3740a7
Bayesian inference for phylogenetics is a gold standard for computing distributions of phylogenies. However, Bayesian phylogenetics faces the challenging computational problem of moving throughout the high-dimensional space of trees. Fortunately, hyp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::328d9a61f882c200e2d57fceea930be5
https://hdl.handle.net/10453/164693
https://hdl.handle.net/10453/164693
Managing the current COVID-19 pandemic requires diagnostic testing at an unprecedented scale. However, the crisis has revealed severe deficiencies in our capacity to perform such testing. Here we build on the work of others (1-3) to develop a protoco
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6954d65aaf3b78fd14fb0c379a6ead0d
https://doi.org/10.17504/protocols.io.betrjem6
https://doi.org/10.17504/protocols.io.betrjem6
Autor:
Aaron Darling, Jens Stoye
This book constitutes the refereed proceedings of the 13th International Workshop on Algorithms in Bioinformatics, WABI 2013, held in Sophia Antipolis, France, in September 2013. WABI 2013 is one of seven workshops which, along with the European Symp