The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Autor: Ann M. Mc Cartney, Giulio Formenti, Alice Mouton, Diego De Panis, Luísa S. Marins, Henrique G. Leitão, Genevieve Diedericks, Joseph Kirangwa, Marco Morselli, Judit Salces-Ortiz, Nuria Escudero, Alessio Iannucci, Chiara Natali, Hannes Svardal, Rosa Fernández, Tim De Pooter, Geert Joris, Mojca Strazisar, Jonathan M. D. Wood, Katie E. Herron, Ole Seehausen, Phillip C. Watts, Felix Shaw, Robert P. Davey, Alice Minotto, José M. Fernández, Astrid Böhne, Carla Alegria, Tyler Alioto, Paulo C. Alves, Isabel R. Amorim, Jean-Marc Aury, Niclas Backstrom, Petr Baldrian, Laima Baltrunaite, Endre Barta, Bertrand BedHom, Caroline Belser, Johannes Bergsten, Laurie Bertrand, Helena Bilandija, Mahesh Binzer-Panchal, Iliana Bista, Mark Blaxter, Paulo A. V. Borges, Guilherme Borges Dias, Mirte Bosse, Tom Brown, Rémy Bruggmann, Elena Buena-Atienza, Josephine Burgin, Elena Buzan, Alessia Cariani, Nicolas Casadei, Matteo Chiara, Sergio Chozas, Fedor Čiampor, Angelica Crottini, Corinne Cruaud, Fernando Cruz, Love Dalen, Alessio De Biase, Javier del Campo, Teo Delic, Alice B. Dennis, Martijn F. L. Derks, Maria Angela Diroma, Mihajla Djan, Simone Duprat, Klara Eleftheriadi, Philine G. D. Feulner, Jean-François Flot, Giobbe Forni, Bruno Fosso, Pascal Fournier, Christine Fournier-Chambrillon, Toni Gabaldon, Shilpa Garg, Carmela Gissi, Luca Giupponi, Jessica Gomez-Garrido, Josefa González, Miguel L. Grilo, Björn Grüning, Thomas Guerin, Nadege Guiglielmoni, Marta Gut, Marcel P. Haesler, Christoph Hahn, Balint Halpern, Peter W. Harrison, Julia Heintz, Maris Hindrikson, Jacob Höglund, Kerstin Howe, Graham M. Hughes, Benjamin Istace, Mark J. Cock, Franc Janžekovič, Zophonias O. Jonsson, Sagane Joye-Dind, Janne J. Koskimäki, Boris Krystufek, Justyna Kubacka, Heiner Kuhl, Szilvia Kusza, Karine Labadie, Meri Lähteenaro, Henrik Lantz, Anton Lavrinienko, Lucas Leclère, Ricardo Jorge Lopes, Ole Madsen, Ghislaine Magdelenat, Giulia Magoga, Tereza Manousaki, Tapio Mappes, Joao Pedro Marques, Gemma I. Martinez Redondo, Florian Maumus, Shane A. McCarthy, Hendrik-Jan Megens, Jose Melo-Ferreira, Sofia L. Mendes, Matteo Montagna, Joao Moreno, Mai-Britt Mosbech, Mónica Moura, Zuzana Musilova, Eugene Myers, Will J. Nash, Alexander Nater, Pamela Nicholson, Manuel Niell, Reindert Nijland, Benjamin Noel, Karin Noren, Pedro H. Oliveira, Remi-Andre Olsen, Lino Ometto, Rebekah A. Oomen, Stephan Ossowski, Vaidas Palinauskas, Snaebjorn Palsson, Jerome P. Panibe, Joana Pauperio, Martina Pavlek, Emilie Payen, Julia Pawlowska, Jaume Pellicer, Graziano Pesole, Joao Pimenta, Martin Pippel, Anna Maria Pirttilä, Nikos Poulakakis, Jeena Rajan, Rúben M.C. Rego, Roberto Resendes, Philipp Resl, Ana Riesgo, Patrik Rodin-Morch, Andre E. R. Soares, Carlos Rodriguez Fernandes, Maria M. Romeiras, Guilherme Roxo, Lukas Rüber, Maria Jose Ruiz-Lopez, Urmas Saarma, Luis P. da Silva, Manuela Sim-Sim, Lucile Soler, Vitor C. Sousa, Carla Sousa Santos, Alberto Spada, Milomir Stefanovic, Viktor Steger, Josefin Stiller, Matthias Stöck, Torsten H. Struck, Hiranya Sudasinghe, Riikka Tapanainen, Christian Tellgren-Roth, Helena Trindade, Yevhen Tukalenko, Ilenia Urso, Benoit Vacherie, Steven M. Van Belleghem, Kees Van Oers, Carlos Vargas-Chavez, Nevena Velickovic, Noel Vella, Adriana Vella, Cristiano Vernesi, Sara Vicente, Sara Villa, Olga Vinnere Pettersson, Filip A. M. Volckaert, Judit Voros, Patrick Wincker, Sylke Winkler, Claudio Ciofi, Robert M. Waterhouse, Camila J. Mazzoni

Publikováno v: npj Biodiversity, Vol 3, Iss 1, Pp 1-17 (2024)

Abstract A genomic database of all Earth’s eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth

Externí odkaz: https://doaj.org/article/b33c23ed92fb4c57a6c4862befc4a2d6

Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research

Autor: Muskan Kapoor, Enrique Sapena Ventura, Amy Walsh, Alexey Sokolov, Nancy George, Sunita Kumari, Nicholas J. Provart, Benjamin Cole, Marc Libault, Timothy Tickle, Wesley C. Warren, James E. Koltes, Irene Papatheodorou, Doreen Ware, Peter W. Harrison, Christine Elsik, Galabina Yordanova, Tony Burdett, Christopher K. Tuggle

Publikováno v: Frontiers in Genetics, Vol 15 (2024)

IntroductionThe agriculture genomics community has numerous data submission standards available, but the standards for describing and storing single-cell (SC, e.g., scRNA- seq) data are comparatively underdeveloped.MethodsTo bridge this gap, we lever

Externí odkaz: https://doaj.org/article/133bd036ce5c49aa9b32e0629a9046ce

Characteristics and Outcomes of Adults With Congenital Heart Disease in the Cardiac Intensive Care Unit

Autor: Ryan R. Keane, MD, Anthony P. Carnicelli, MD, Daniel B. Loriaux, MD, Payton Kendsersky, MD, Richard A. Krasuski, MD, Kelly M. Brown, BSN, Kelly Arps, MD, Vivian Baird-Zars, MPH, Jeffrey A. Dixson, MD, Emily Echols, Christopher B. Granger, MD, Robert W. Harrison, MD, Michael Kontos, MD, L. Kristin Newby, MD, MHS, Jeong-Gun Park, PhD, Kevin S. Shah, MD, Bradley W. Ternus, MD, Sean Van Diepen, MD, Jason N. Katz, MD, MHS, David A. Morrow, MD, MPH

Publikováno v: JACC: Advances, Vol 3, Iss 8, Pp 101077- (2024)

Background: Little is known regarding the characteristics, treatment patterns, and outcomes in patients with adult congenital heart disease (ACHD) admitted to cardiac intensive care units (CICUs). Objectives: The authors sought to better define the c

Externí odkaz: https://doaj.org/article/9474f3dacc684e14afffae8bb9651e71

Orandi flap—A versatile option for anterior urethral stricture disease and experience in a regional Australian centre

Autor: K Ravichandran, W Harrison, D Desai

Publikováno v: Urology Video Journal, Vol 22, Iss , Pp 100270- (2024)

Objective: In regards to the treatment of anterior urethral stricture disease, a Urologist must possess diverse techniques tailored to address the varied clinical presentations of the entity. The Orandi flap, a longitudinal ventral penile skin flap w

Externí odkaz: https://doaj.org/article/441ba11df31c48c1b06a1aceb6901baa

Linking microbiome and stress hormone responses in wild tropical treefrogs across continuous and fragmented forests

Autor: Wesley J. Neely, Renato A. Martins, Camila M. Mendonça da Silva, Tainá Ferreira da Silva, Lucas E. Fleck, Ross D. Whetstone, Douglas C. Woodhams, W. Harrison Cook, Paula R. Prist, Victor H. Valiati, Sasha E. Greenspan, Alexandro M. Tozetti, Ryan L. Earley, C. Guilherme Becker

Publikováno v: Communications Biology, Vol 6, Iss 1, Pp 1-15 (2023)

Abstract The amphibian skin microbiome is an important component of anti-pathogen defense, but the impact of environmental change on the link between microbiome composition and host stress remains unclear. In this study, we used radiotelemetry and ho

Externí odkaz: https://doaj.org/article/5ab10e8681c344bfb613ba97c0d22103