Zobrazeno 1 - 10
of 70
pro vyhledávání: '"A. Scott Durkin"'
Autor:
Martin Wu, Qinghu Ren, A. Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publikováno v:
PLoS Genetics, Vol 2, Iss 4 (2006)
Externí odkaz:
https://doaj.org/article/683d38255c424fc7bd665d96d62b1484
Autor:
Farideh Chitsaz, Narmada Thanki, A Scott Durkin, Azat Badretdin, Jiyao Wang, Wenjun Li, Marc Gwadz, James S. Song, George Coulouris, Françoise Thibaud-Nissen, Kathleen R O’Neill, Michael DiCuccio, Aron Marchler-Bauer, Christopher J. Lanczycki, Noreen R. Gonzales, Mingzhang Yang, Chanjuan Zheng, Vyacheslav Chetvernin, Daniel H. Haft, Myra K. Derbyshire, Roxanne A. Yamashita
Publikováno v:
Nucleic Acids Res
The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information (NCBI) contains nearly 200 000 bacterial and archaeal genomes and 150 million proteins with up-to-date annotation. Changes in the Prokaryotic Genome Annotati
Autor:
Vivien G Dugan, Scott J Emrich, Gloria I Giraldo-Calderón, Omar S Harb, Ruchi M Newman, Brett E Pickett, Lynn M Schriml, Timothy B Stockwell, Christian J Stoeckert, Dan E Sullivan, Indresh Singh, Doyle V Ward, Alison Yao, Jie Zheng, Tanya Barrett, Bruce Birren, Lauren Brinkac, Vincent M Bruno, Elizabet Caler, Sinéad Chapman, Frank H Collins, Christina A Cuomo, Valentina Di Francesco, Scott Durkin, Mark Eppinger, Michael Feldgarden, Claire Fraser, W Florian Fricke, Maria Giovanni, Matthew R Henn, Erin Hine, Julie Dunning Hotopp, Ilene Karsch-Mizrachi, Jessica C Kissinger, Eun Mi Lee, Punam Mathur, Emmanuel F Mongodin, Cheryl I Murphy, Garry Myers, Daniel E Neafsey, Karen E Nelson, William C Nierman, Julia Puzak, David Rasko, David S Roos, Lisa Sadzewicz, Joana C Silva, Bruno Sobral, R Burke Squires, Rick L Stevens, Luke Tallon, Herve Tettelin, David Wentworth, Owen White, Rebecca Will, Jennifer Wortman, Yun Zhang, Richard H Scheuermann
Publikováno v:
PLoS ONE, Vol 9, Iss 6, p e99979 (2014)
High throughput sequencing has accelerated the determination of genome sequences for thousands of human infectious disease pathogens and dozens of their vectors. The scale and scope of these data are enabling genotype-phenotype association studies to
Externí odkaz:
https://doaj.org/article/7ea0c224c6f4484e9585bedb61a17966
Autor:
Jason S Lehmann, Derrick E Fouts, Daniel H Haft, Anthony P Cannella, Jessica N Ricaldi, Lauren Brinkac, Derek Harkins, Scott Durkin, Ravi Sanka, Granger Sutton, Angelo Moreno, Joseph M Vinetz, Michael A Matthias
Publikováno v:
PLoS Neglected Tropical Diseases, Vol 7, Iss 10, p e2468 (2013)
Leptospirosis is a globally important, neglected zoonotic infection caused by spirochetes of the genus Leptospira. Since genetic transformation remains technically limited for pathogenic Leptospira, a systems biology pathogenomic approach was used to
Externí odkaz:
https://doaj.org/article/70d7d617f34747f59cbc58ff8ca91f0e
Autor:
Joyce E Loper, Karl A Hassan, Dmitri V Mavrodi, Edward W Davis, Chee Kent Lim, Brenda T Shaffer, Liam D H Elbourne, Virginia O Stockwell, Sierra L Hartney, Katy Breakwell, Marcella D Henkels, Sasha G Tetu, Lorena I Rangel, Teresa A Kidarsa, Neil L Wilson, Judith E van de Mortel, Chunxu Song, Rachel Blumhagen, Diana Radune, Jessica B Hostetler, Lauren M Brinkac, A Scott Durkin, Daniel A Kluepfel, W Patrick Wechter, Anne J Anderson, Young Cheol Kim, Leland S Pierson, Elizabeth A Pierson, Steven E Lindow, Donald Y Kobayashi, Jos M Raaijmakers, David M Weller, Linda S Thomashow, Andrew E Allen, Ian T Paulsen
Publikováno v:
PLoS Genetics, Vol 8, Iss 7, p e1002784 (2012)
We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic inte
Externí odkaz:
https://doaj.org/article/110e50095fc04cacbd3118405748e48c
Autor:
Liliana Losada, John J Varga, Jessica Hostetler, Diana Radune, Maria Kim, Scott Durkin, Olaf Schneewind, William C Nierman
Publikováno v:
PLoS ONE, Vol 6, Iss 4, p e19054 (2011)
Yersinia pestis is the causative agent of the plague. Y. pestis KIM 10+ strain was passaged and selected for loss of the 102 kb pgm locus, resulting in an attenuated strain, KIM D27. In this study, whole genome sequencing was performed on KIM D27 in
Externí odkaz:
https://doaj.org/article/8952bb78d0594e8da34a3e4fe78c7ddb
Autor:
Carl J Yeoman, Suleyman Yildirim, Susan M Thomas, A Scott Durkin, Manolito Torralba, Granger Sutton, Christian J Buhay, Yan Ding, Shannon P Dugan-Rocha, Donna M Muzny, Xiang Qin, Richard A Gibbs, Steven R Leigh, Rebecca Stumpf, Bryan A White, Sarah K Highlander, Karen E Nelson, Brenda A Wilson
Publikováno v:
PLoS ONE, Vol 5, Iss 8, p e12411 (2010)
BackgroundGardnerella vaginalis is described as a common vaginal bacterial species whose presence correlates strongly with bacterial vaginosis (BV). Here we report the genome sequencing and comparative analyses of three strains of G. vaginalis. Strai
Externí odkaz:
https://doaj.org/article/e92285aabc794c8980bb6bcca86cbe10
Autor:
Martin Wu, Qinghu Ren, A Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publikováno v:
PLoS Genetics, Vol 1, Iss 5, p e65 (2005)
We report here the sequencing and analysis of the genome of the thermophilic bacterium Carboxydothermus hydrogenoformans Z-2901. This species is a model for studies of hydrogenogens, which are diverse bacteria and archaea that grow anaerobically util
Externí odkaz:
https://doaj.org/article/a452bdfa5c1649a6821371d34f611950
Autor:
Derrick E Fouts, Emmanuel F Mongodin, Robert E Mandrell, William G Miller, David A Rasko, Jacques Ravel, Lauren M Brinkac, Robert T DeBoy, Craig T Parker, Sean C Daugherty, Robert J Dodson, A Scott Durkin, Ramana Madupu, Steven A Sullivan, Jyoti U Shetty, Mobolanle A Ayodeji, Alla Shvartsbeyn, Michael C Schatz, Jonathan H Badger, Claire M Fraser, Karen E Nelson
Publikováno v:
PLoS Biology, Vol 3, Iss 1, p e15 (2005)
Sequencing and comparative genome analysis of four strains of Campylobacter including C. lari RM2100, C. upsaliensis RM3195, and C. coli RM2228 has revealed major structural differences that are associated with the insertion of phage- and plasmid-lik
Externí odkaz:
https://doaj.org/article/e89f0d035a21456f8e69ebec485e7998
Autor:
Naomi Ward, Øivind Larsen, James Sakwa, Live Bruseth, Hoda Khouri, A Scott Durkin, George Dimitrov, Lingxia Jiang, David Scanlan, Katherine H Kang, Matt Lewis, Karen E Nelson, Barbara Methé, Martin Wu, John F Heidelberg, Ian T Paulsen, Derrick Fouts, Jacques Ravel, Hervé Tettelin, Qinghu Ren, Tim Read, Robert T DeBoy, Rekha Seshadri, Steven L Salzberg, Harald B Jensen, Nils Kåre Birkeland, William C Nelson, Robert J Dodson, Svenn H Grindhaug, Ingeborg Holt, Ingvar Eidhammer, Inge Jonasen, Susan Vanaken, Terry Utterback, Tamara V Feldblyum, Claire M Fraser, Johan R Lillehaug, Jonathan A Eisen
Publikováno v:
PLoS Biology, Vol 2, Iss 10, p e303 (2004)
Methanotrophs are ubiquitous bacteria that can use the greenhouse gas methane as a sole carbon and energy source for growth, thus playing major roles in global carbon cycles, and in particular, substantially reducing emissions of biologically generat
Externí odkaz:
https://doaj.org/article/cb98eb251c6b4521b13e6fae601a7302