Zobrazeno 1 - 10
of 62
pro vyhledávání: '"A. E. Cavender"'
Publikováno v:
Atmospheric Chemistry and Physics, Vol 8, Iss 6, Pp 1737-1750 (2008)
Volatile organic compound concentration ratios can be used as indicators of halogen chemistry that occurs during ozone depletion events in the Arctic during spring. Here we use a combination of modeling and measurements of [acetone]/[propanal] as an
Externí odkaz:
https://doaj.org/article/d1f7f8c19dff4b1db135523ed16a4cc1
Autor:
Griffin M. Schroeder, Chapin E. Cavender, Maya E. Blau, Jermaine L. Jenkins, David H. Mathews, Joseph E. Wedekind
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-9 (2022)
Riboswitches contain an aptamer domain that recognizes a metabolite and an expression platform that regulates gene expression. Here the authors report the crystal structure of a preQ1-sensing riboswitch from Carnobacterium antarcticus that shows two
Externí odkaz:
https://doaj.org/article/c1eaaded2e2042d0bb89dc2e7892de24
Publikováno v:
Methods in Molecular Biology ISBN: 9781071626863
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d062963582d1ed0fd2207200c13cef09
https://doi.org/10.1007/978-1-0716-2687-0_5
https://doi.org/10.1007/978-1-0716-2687-0_5
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2568
Isothermal titration calorimetry (ITC) is a powerful biophysical tool to characterize energetic profiles of biomacromolecular interactions without any alteration of the underlying chemical structures. In this protocol, we describe procedures for perf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a14d3cfc9dfce5082495f6dee9778a49
https://pubmed.ncbi.nlm.nih.gov/36227562
https://pubmed.ncbi.nlm.nih.gov/36227562
Autor:
Eliezra Glasser, Debanjana Maji, Giulia Biancon, Anees Mohammed Keedakkatt Puthenpeedikakkal, Chapin E Cavender, Toma Tebaldi, Jermaine L Jenkins, David H Mathews, Stephanie Halene, Clara L Kielkopf
Publikováno v:
Nucleic acids research. 50(9)
The essential pre-mRNA splicing factor U2AF2 (also called U2AF65) identifies polypyrimidine (Py) tract signals of nascent transcripts, despite length and sequence variations. Previous studies have shown that the U2AF2 RNA recognition motifs (RRM1 and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::650d69018f920925266f5e33b0615612
https://pubmed.ncbi.nlm.nih.gov/35524551
https://pubmed.ncbi.nlm.nih.gov/35524551
Autor:
Clara L. Kielkopf, Jermaine L. Jenkins, Stephanie Halene, Eliezra Glasser, Mary J. Pulvino, Giulia Biancon, Debanjana Maji, Chapin E. Cavender, Anees Mohammed Keedakkatt Puthenpeedikakkal, Toma Tebaldi, David H. Mathews
The essential pre-mRNA splicing factor U2AF2 (also called U2AF65) identifies polypyrimidine (Py) tract signals of nascent transcripts, despite length and sequence variations. Previous studies have shown that the U2AF2 RNA recognition motifs (RRM1 and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::114708a8a54b760a77eaf7db4e27a94d
https://doi.org/10.1101/2021.09.27.462007
https://doi.org/10.1101/2021.09.27.462007
Autor:
Chapin E. Cavender
Open Force Field protein force field meeting. Chapin Cavender presented a benchmark of OpenFF force fields against tetrapeptide torsion profiles from TorsionDrives from Dave Cerutti (slides attached). The presentation was followed by a group discussi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::150044c62fc8940189dda0ed97126196
Publikováno v:
J Am Chem Soc
RNA recognition by proteins is central to biology. Here we demonstrate the existence of a recurrent structural motif, the "arginine fork", that codifies arginine readout of cognate backbone and guanine nucleobase interactions in a variety of protein-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a422e7e401d5a0c1ad244da2ad9e6f92
https://pubmed.ncbi.nlm.nih.gov/33170672
https://pubmed.ncbi.nlm.nih.gov/33170672
Autor:
Jermaine L. Jenkins, Debapratim Dutta, Cameron D. Baker, Joseph E. Wedekind, Chapin E. Cavender, Griffin M. Schroeder, David H. Mathews, John M. Ashton, Elizabeth M Pritchett
Publikováno v:
Nucleic Acids Research
Riboswitches are structured RNA motifs that recognize metabolites to alter the conformations of downstream sequences, leading to gene regulation. To investigate this molecular framework, we determined crystal structures of a preQ1-I riboswitch in eff
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea0a7be3e4855625f4c2f616c8436d54
https://pubmed.ncbi.nlm.nih.gov/32597951
https://pubmed.ncbi.nlm.nih.gov/32597951
Autor:
Chapin E. Cavender, Pavan K. Behara, Simon Boothroyd, David L. Dotson, Ivan J. Pulido, Matthew W. Thompson, Jeffrey Wagner, Lily Wang, John D. Chodera, David L. Mobley, Michael R. Shirts, Michael K. Gilson
Publikováno v:
Biophysical Journal. 121:272a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f1db4334130b14595291defd5bb461bc
https://doi.org/10.1016/j.bpj.2021.11.1367
https://doi.org/10.1016/j.bpj.2021.11.1367