Výsledky vyhledávání - "A V, Finkel'shtein"

Analogy-based protein structure prediction: III. Optimizing the combination of the substitution matrix and pseudopotentials used to align protein sequences with spatial structures

Autor: A. V. Finkel’shtein, M. Yu. Lobanov

Publikováno v: Molecular Biology. 44:109-118

A general and fast method for maximizing the “recognition ability” of a linear combination of an arbitrary number of various methods used to recognize protein structures and produce sequence-to-structure alignments for the structurally analogous

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::78e4762b6b238ca63f6743eb6e3c8378
https://doi.org/10.1134/s0026893310010140

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Analogy-based protein structure prediction: I. A new database of spatially similar and dissimilar structures of protein domains for testing and optimizing prediction methods

Autor: Natalya S. Bogatyreva, M. Yu. Lobanov, A. V. Finkel’shtein, Dmitry N. Ivankov

Publikováno v: Molecular Biology. 43:665-676

The creation and analysis of the 3Dfold_test database are described. This database comprises a large set of pairs of spatially similar protein domain structures and a larger control set of “decoys,” spatially dissimilar protein structures with ap

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d508a84281dc4d774d45f9297f43430e
https://doi.org/10.1134/s0026893309040190

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Analogy-based protein structure prediction: II. Testing of substitution matrices and pseudopotentials used to align protein sequences with spatial structures

Autor: A. V. Finkel’shtein, M. Yu. Lobanov

Publikováno v: Molecular Biology. 43:677-684

The results of testing the recognition ability of various amino acid substitution matrices and manifold (both extracted from the literature and of our own design) pseudopotentials intended for the recognition of protein structures and sequence-to-str

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::84762e412b1762cc9c7d6635ed899f80
https://doi.org/10.1134/s0026893309040207

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Information on the secondary structure improves the quality of protein sequence alignment

Autor: M. Yu. Lobanov, Andrey A. Mironov, Mikhail A. Roytberg, I I Litvinov, A. V. Finkel’shtein

Publikováno v: Molecular Biology. 40:474-480

The most popular algorithms employed in the pairwise alignment of protein primary structures (Smith-Watermann (SW) algorithm, FASTA, BLAST, etc.) only analyze the amino acid sequence. The SW algorithm is the most accurate, yielding alignments that ag

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d0b2e8d5e7b1c998cfa191c8ea52a3c7
https://doi.org/10.1134/s0026893306030149

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[Atomic force field FFsol for calculation of molecular interactions of in water environment]

Autor: L B, Pereiaslavets, A V, Finkel'shtein

Publikováno v: Molekuliarnaia biologiia. 44(2)

Detailed calculations of protein interactions with explicitly considered water takes enormous computer time. The calculation becomes faster if water is considered implicitly (as a continuous media rather than as molecules); however, these calculation

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::28c1242d6bb10be2f85ec195ff1c4521
https://pubmed.ncbi.nlm.nih.gov/20586195

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[Protein structure prediction from analogy. III. Optimization of a combination of substitution matrices and pseudo-potentials used to align protein]

Autor: M Iu, Lobanov, A V, Finkel'shtein

Publikováno v: Molekuliarnaia biologiia. 44(1)

We describe a general and fast method of maximization of a "recognition ability" of a linear combination of an arbitrary number of various methods used to recognize protein structures and produce the sequence-to-structure alignments. It is shown that

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::fa45a614cbd54da093b50aab10b255ca
https://pubmed.ncbi.nlm.nih.gov/20198866

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Asymptotic behavior of solutions of the equation of high-intensity heat exchange

Autor: A. V. Finkel'shtein

Publikováno v: Journal of Engineering Physics. 46:500-503

The convergence of solutions of the equation of high-intensity heat exchange to solutions of the classical problem of heat conduction is established when the relaxation time of the thermal process tends to zero.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::c9ef0e3575fcb93e58de6335117fcbbb
https://doi.org/10.1007/bf00826416

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Solution of the hyperbolic heat-conduction equation by expansion in a small parameter

Autor: A. V. Finkel'shtein

Publikováno v: Journal of Engineering Physics. 44:555-559

A method of finding the solution of the hyperbolic heat-conduction equation as a power series of a small parameter (the relaxation time) is discussed.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::ab68c6951187a4fe88d465ed7714ece6
https://doi.org/10.1007/bf00831945

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Stereochemical analysis of the secondary structure of polypeptide chains with the aid of Courtauld three-dimensional models. II. Hydrogen and hydrophobic bonds

Autor: A V, Finkel'shtein

Publikováno v: Molekuliarnaia biologiia. 10(4)

Sterically permissible hydrogen bonds between side chains and the backbone, which fix a small number of angles of internal rotation have been identified. The hydrogen bonds on the ends and within the secondary structures, as well as the most importan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::d79dd064c1ee529ce13b0cce4bb9c1fe
https://pubmed.ncbi.nlm.nih.gov/1023051

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