Zobrazeno 1 - 10
of 70
pro vyhledávání: '"A Scott Durkin"'
Autor:
Joyce E Loper, Karl A Hassan, Dmitri V Mavrodi, Edward W Davis, Chee Kent Lim, Brenda T Shaffer, Liam D H Elbourne, Virginia O Stockwell, Sierra L Hartney, Katy Breakwell, Marcella D Henkels, Sasha G Tetu, Lorena I Rangel, Teresa A Kidarsa, Neil L Wilson, Judith E van de Mortel, Chunxu Song, Rachel Blumhagen, Diana Radune, Jessica B Hostetler, Lauren M Brinkac, A Scott Durkin, Daniel A Kluepfel, W Patrick Wechter, Anne J Anderson, Young Cheol Kim, Leland S Pierson, Elizabeth A Pierson, Steven E Lindow, Donald Y Kobayashi, Jos M Raaijmakers, David M Weller, Linda S Thomashow, Andrew E Allen, Ian T Paulsen
Publikováno v:
PLoS Genetics, Vol 8, Iss 7, p e1002784 (2012)
We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic inte
Externí odkaz:
https://doaj.org/article/110e50095fc04cacbd3118405748e48c
Autor:
Carl J Yeoman, Suleyman Yildirim, Susan M Thomas, A Scott Durkin, Manolito Torralba, Granger Sutton, Christian J Buhay, Yan Ding, Shannon P Dugan-Rocha, Donna M Muzny, Xiang Qin, Richard A Gibbs, Steven R Leigh, Rebecca Stumpf, Bryan A White, Sarah K Highlander, Karen E Nelson, Brenda A Wilson
Publikováno v:
PLoS ONE, Vol 5, Iss 8, p e12411 (2010)
BackgroundGardnerella vaginalis is described as a common vaginal bacterial species whose presence correlates strongly with bacterial vaginosis (BV). Here we report the genome sequencing and comparative analyses of three strains of G. vaginalis. Strai
Externí odkaz:
https://doaj.org/article/e92285aabc794c8980bb6bcca86cbe10
Autor:
Joyce C Yang, Ramana Madupu, A Scott Durkin, Nathan A Ekborg, Chandra S Pedamallu, Jessica B Hostetler, Diana Radune, Bradley S Toms, Bernard Henrissat, Pedro M Coutinho, Sandra Schwarz, Lauren Field, Amaro E Trindade-Silva, Carlos A G Soares, Sherif Elshahawi, Amro Hanora, Eric W Schmidt, Margo G Haygood, Janos Posfai, Jack Benner, Catherine Madinger, John Nove, Brian Anton, Kshitiz Chaudhary, Jeremy Foster, Alex Holman, Sanjay Kumar, Philip A Lessard, Yvette A Luyten, Barton Slatko, Nicole Wood, Bo Wu, Max Teplitski, Joseph D Mougous, Naomi Ward, Jonathan A Eisen, Jonathan H Badger, Daniel L Distel
Publikováno v:
PLoS ONE, Vol 4, Iss 7, p e6085 (2009)
Here we report the complete genome sequence of Teredinibacter turnerae T7901. T. turnerae is a marine gamma proteobacterium that occurs as an intracellular endosymbiont in the gills of wood-boring marine bivalves of the family Teredinidae (shipworms)
Externí odkaz:
https://doaj.org/article/5907ccecd73a42778790741821df937f
Autor:
Martin Wu, Qinghu Ren, A Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publikováno v:
PLoS Genetics, Vol 1, Iss 5, p e65 (2005)
We report here the sequencing and analysis of the genome of the thermophilic bacterium Carboxydothermus hydrogenoformans Z-2901. This species is a model for studies of hydrogenogens, which are diverse bacteria and archaea that grow anaerobically util
Externí odkaz:
https://doaj.org/article/a452bdfa5c1649a6821371d34f611950
Autor:
Derrick E Fouts, Emmanuel F Mongodin, Robert E Mandrell, William G Miller, David A Rasko, Jacques Ravel, Lauren M Brinkac, Robert T DeBoy, Craig T Parker, Sean C Daugherty, Robert J Dodson, A Scott Durkin, Ramana Madupu, Steven A Sullivan, Jyoti U Shetty, Mobolanle A Ayodeji, Alla Shvartsbeyn, Michael C Schatz, Jonathan H Badger, Claire M Fraser, Karen E Nelson
Publikováno v:
PLoS Biology, Vol 3, Iss 1, p e15 (2005)
Sequencing and comparative genome analysis of four strains of Campylobacter including C. lari RM2100, C. upsaliensis RM3195, and C. coli RM2228 has revealed major structural differences that are associated with the insertion of phage- and plasmid-lik
Externí odkaz:
https://doaj.org/article/e89f0d035a21456f8e69ebec485e7998
Autor:
Naomi Ward, Øivind Larsen, James Sakwa, Live Bruseth, Hoda Khouri, A Scott Durkin, George Dimitrov, Lingxia Jiang, David Scanlan, Katherine H Kang, Matt Lewis, Karen E Nelson, Barbara Methé, Martin Wu, John F Heidelberg, Ian T Paulsen, Derrick Fouts, Jacques Ravel, Hervé Tettelin, Qinghu Ren, Tim Read, Robert T DeBoy, Rekha Seshadri, Steven L Salzberg, Harald B Jensen, Nils Kåre Birkeland, William C Nelson, Robert J Dodson, Svenn H Grindhaug, Ingeborg Holt, Ingvar Eidhammer, Inge Jonasen, Susan Vanaken, Terry Utterback, Tamara V Feldblyum, Claire M Fraser, Johan R Lillehaug, Jonathan A Eisen
Publikováno v:
PLoS Biology, Vol 2, Iss 10, p e303 (2004)
Methanotrophs are ubiquitous bacteria that can use the greenhouse gas methane as a sole carbon and energy source for growth, thus playing major roles in global carbon cycles, and in particular, substantially reducing emissions of biologically generat
Externí odkaz:
https://doaj.org/article/cb98eb251c6b4521b13e6fae601a7302
Autor:
Martin Wu, Ling V Sun, Jessica Vamathevan, Markus Riegler, Robert Deboy, Jeremy C Brownlie, Elizabeth A McGraw, William Martin, Christian Esser, Nahal Ahmadinejad, Christian Wiegand, Ramana Madupu, Maureen J Beanan, Lauren M Brinkac, Sean C Daugherty, A Scott Durkin, James F Kolonay, William C Nelson, Yasmin Mohamoud, Perris Lee, Kristi Berry, M Brook Young, Teresa Utterback, Janice Weidman, William C Nierman, Ian T Paulsen, Karen E Nelson, Hervé Tettelin, Scott L O'Neill, Jonathan A Eisen
Publikováno v:
PLoS Biology, Vol 2, Iss 3, p E69 (2004)
The complete sequence of the 1,267,782 bp genome of Wolbachia pipientis wMel, an obligate intracellular bacteria of Drosophila melanogaster, has been determined. Wolbachia, which are found in a variety of invertebrate species, are of great interest d
Externí odkaz:
https://doaj.org/article/8efc105c227a47e0b3a4d49569ca57c9
Autor:
Farideh Chitsaz, Narmada Thanki, A Scott Durkin, Azat Badretdin, Jiyao Wang, Wenjun Li, Marc Gwadz, James S. Song, George Coulouris, Françoise Thibaud-Nissen, Kathleen R O’Neill, Michael DiCuccio, Aron Marchler-Bauer, Christopher J. Lanczycki, Noreen R. Gonzales, Mingzhang Yang, Chanjuan Zheng, Vyacheslav Chetvernin, Daniel H. Haft, Myra K. Derbyshire, Roxanne A. Yamashita
Publikováno v:
Nucleic Acids Res
The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information (NCBI) contains nearly 200 000 bacterial and archaeal genomes and 150 million proteins with up-to-date annotation. Changes in the Prokaryotic Genome Annotati
Autor:
Rosamond Rhodes, Asif T. Chinwalla, Tessa Madden, Ashlee M. Earl, Maria C. Rivera, Candace N. Farmer, Jonathan M. Goldberg, Karthik Kota, Victor Felix, Nicholas B. King, Shibu Yooseph, Erica Sodergren, Monika Bihan, Martin J. Blaser, Dirk Gevers, Dan Knights, Pamela Sankar, Anup Mahurkar, Heather Huot Creasy, Veena Bhonagiri, Thomas M. Schmidt, Curtis Huttenhower, Mina Rho, Todd J. Treangen, Thomas J. Sharpton, I. Min A. Chen, Bo Liu, Sarah K. Highlander, Catherine C. Davis, Susan M. Huse, Richard A. Gibbs, Noam J. Davidovics, Patricio S. La Rosa, Carsten Russ, Wesley C. Warren, Richard K. Wilson, Patrick Minx, Jean E. McEwen, Alyxandria M. Schubert, Scott Anderson, Bonnie P. Youmans, Jamison McCorrison, Kathie A. Mihindukulasuriya, Vandita Joshi, Peter J. Mannon, Brandi L. Cantarel, Joseph F. Petrosino, Jack D. Sobel, Chandri Yandava, Sharvari Gujja, Janet K. Jansson, David J. Dooling, Daniel McDonald, Rob Knight, Granger G. Sutton, Gary C. Armitage, Larry J. Forney, Robert S. Fulton, Yuan Qing Wu, Jonathan Crabtree, Susan Kinder-Haake, Lu Wang, Liang Ye, Victor M. Markowitz, Narmada Shenoy, Elizabeth A. Lobos, Ruth M. Farrell, Tatiana A. Vishnivetskaya, Patrick S. G. Chain, Jacques Ravel, Katherine H. Huang, Sergey Koren, Yan Ding, Christina Giblin, Jason R. Miller, Michelle G. Giglio, Gina A. Simone, Chad Nusbaum, Lynn M. Schriml, Matthew C. Ross, Daniel D. Sommer, Sandra L. Lee, Theresa A. Hepburn, Michael Holder, Shaila Chhibba, Patrick D. Schloss, Omry Koren, Lan Zhang, Catrina Fronick, Richard R. Sharp, Diana Tabbaa, Yuzhen Ye, Dennis C. Friedrich, Christie Kovar, Owen White, A. Scott Durkin, Michael Feldgarden, Gary L. Andersen, Makedonka Mitreva, Todd Wylie, Nihar U. Sheth, Sheila Fisher, John Martin, Jose C. Clemente, Xiang Qin, James Versalovic, Dana A. Busam, Bruce W. Birren, Jeremy Zucker, Yu-Hui Rogers, Shannon Dugan, Kristine M. Wylie, Katherine P. Lemon, Floyd E. Dewhirst, Nicola Segata, Konstantinos Liolios, Anthony A. Fodor, Elizabeth L. Appelbaum, Ramana Madupu, W. Michael Dunne, Katherine S. Pollard, Leslie Foster, Olukemi O. Abolude, Yue Liu, Nikos C. Kyrpides, Christopher Wellington, Yanjiao Zhou, Lita M. Proctor, Tsegahiwot Belachew, Mircea Podar, Julia A. Segre, Holli A. Hamilton, Aye Wollam, Paul Spicer, Lei Chen, Sarah Young, Beltran Rodriguez-Mueller, Todd Z. DeSantis, Sean M. Sykes, Toby Bloom, Kelvin Li, Shane Canon, Catherine Jordan, Manolito Torralba, Brandi Herter, R. Dwayne Lunsford, Krishna Palaniappan, Jeroen Raes, Hongyu Gao, Barbara A. Methé, Kjersti Aagaard, Amy L. McGuire, Jonathan Friedman, Matthew D. Pearson, Jason Walker, Mary A. Cutting, Jonathan H. Badger, Diane E. Hoffmann, Tulin Ayvaz, Michael Fitzgerald, Brian J. Haas, Ravi Sanka, Doyle V. Ward, Kris A. Wetterstrand, Mark A. Watson, Christopher Smillie, Lucinda Fulton, Zhengyuan Wang, Lisa Begg, James R. White, Konstantinos Mavrommatis, Lucia Alvarado, Pamela McInnes, Emily L. Harris, Harindra Arachchi, Craig Pohl, Catherine A. Lozupone, Ruth E. Ley, Clinton Howarth, Yiming Zhu, Huaiyang Jiang, Gregory A. Buck, Carl C. Baker, Kimberley D. Delehaunty, Cristyn Kells, Katarzyna Wilczek-Boney, Kim C. Worley, Cesar Arze, J. Fah Sathirapongsasuti, Carolyn Deal, Sandra W. Clifton, Ken Chu, Rachel L. Erlich, Elaine R. Mardis, Cecil M. Lewis, Niall Lennon, Margaret Priest, Scott T. Kelley, Kymberlie Hallsworth-Pepin, Jane Peterson, Allison D. Griggs, Michelle O'Laughlin, Heidi H. Kong, Joshua Orvis, Maria Y. Giovanni, Sahar Abubucker, Dawn Ciulla, Sean Conlan, Chien Chi Lo, Antonio Gonzalez, Georgia Giannoukos, Jennifer R. Wortman, Paul Brooks, Jacques Izard, Chad Tomlinson, Donna M. Muzny, Shital M. Patel, Eric J. Alm, George M. Weinstock, Irene Newsham, Jeffrey G. Reid, Karoline Faust, Qiandong Zeng, Elena Deych, Nathalia Garcia, Mathangi Thiagarajan, James A. Katancik, Vivien Bonazzi, Robert C. Edgar, Christian J. Buhay, Indresh Singh, Johannes B. Goll, Ioanna Pagani, Vincent Magrini, Wendy A. Keitel, Emma Allen-Vercoe, Teena Mehta, Jeffery A. Schloss, William D. Shannon, Mihai Pop, Matthew B. Scholz, Valentina Di Francesco, Rebecca Truty, Karen E. Nelson, Kevin Riehle, Lora Lewis, Joseph L. Campbell, Laurie Zoloth
Publikováno v:
Nature
PubMed Central
PubMed Central
A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The National Institutes of Health (NIH)-funded Human Microbiome Project Consortium has establishe
Autor:
A. Scott Durkin, Robert J. Dodson, Granger G. Sutton, Ramana Madupu, R. Alexander Richter, Derek M. Harkins, Susmita Shrivastava, Daniel H. Haft, Lauren M. Brinkac
Publikováno v:
Nucleic Acids Research
CharProtDB (http://www.jcvi.org/charprotdb/) is a curated database of biochemically characterized proteins. It provides a source of direct rather than transitive assignments of function, designed to support automated annotation pipelines. The initial