CompassDock: Comprehensive Accurate Assessment Approach for Deep Learning-Based Molecular Docking in Inference and Fine-Tuning

Autor: Sarigun, Ahmet, Franke, Vedran, Uyar, Bora, Akalin, Altuna

Datasets used for molecular docking, such as PDBBind, contain technical variability - they are noisy. Although the origins of the noise have been discussed, a comprehensive analysis of the physical, chemical, and bioactivity characteristics of the da

Externí odkaz: http://arxiv.org/abs/2406.06841

ASI as the New God: Technocratic Theocracy

Autor: Uyar, Tevfik

As Artificial General Intelligence edges closer to reality, Artificial Superintelligence does too. This paper argues that ASI's unparalleled capabilities might lead people to attribute godlike infallibility to it, resulting in a cognitive bias toward

Externí odkaz: http://arxiv.org/abs/2406.08492

DenseNet and Support Vector Machine classifications of major depressive disorder using vertex-wise cortical features

Autor: Belov, Vladimir, Erwin-Grabner, Tracy, Zeng, Ling-Li, Ching, Christopher R. K., Aleman, Andre, Amod, Alyssa R., Basgoze, Zeynep, Benedetti, Francesco, Besteher, Bianca, Brosch, Katharina, Bülow, Robin, Colle, Romain, Connolly, Colm G., Corruble, Emmanuelle, Couvy-Duchesne, Baptiste, Cullen, Kathryn, Dannlowski, Udo, Davey, Christopher G., Dols, Annemiek, Ernsting, Jan, Evans, Jennifer W., Fisch, Lukas, Fuentes-Claramonte, Paola, Gonul, Ali Saffet, Gotlib, Ian H., Grabe, Hans J., Groenewold, Nynke A., Grotegerd, Dominik, Hahn, Tim, Hamilton, J. Paul, Han, Laura K. M., Harrison, Ben J, Ho, Tiffany C., Jahanshad, Neda, Jamieson, Alec J., Karuk, Andriana, Kircher, Tilo, Klimes-Dougan, Bonnie, Koopowitz, Sheri-Michelle, Lancaster, Thomas, Leenings, Ramona, Li, Meng, Linden, David E. J., MacMaster, Frank P., Mehler, David M. A., Meinert, Susanne, Melloni, Elisa, Mueller, Bryon A., Mwangi, Benson, Nenadić, Igor, Ojha, Amar, Okamoto, Yasumasa, Oudega, Mardien L., Penninx, Brenda W. J. H., Poletti, Sara, Pomarol-Clotet, Edith, Portella, Maria J., Pozzi, Elena, Radua, Joaquim, Rodríguez-Cano, Elena, Sacchet, Matthew D., Salvador, Raymond, Schrantee, Anouk, Sim, Kang, Soares, Jair C., Solanes, Aleix, Stein, Dan J., Stein, Frederike, Stolicyn, Aleks, Thomopoulos, Sophia I., Toenders, Yara J., Uyar-Demir, Aslihan, Vieta, Eduard, Vives-Gilabert, Yolanda, Völzke, Henry, Walter, Martin, Whalley, Heather C., Whittle, Sarah, Winter, Nils, Wittfeld, Katharina, Wright, Margaret J., Wu, Mon-Ju, Yang, Tony T., Zarate, Carlos, Veltman, Dick J., Schmaal, Lianne, Thompson, Paul M., Goya-Maldonado, Roberto

Major depressive disorder (MDD) is a complex psychiatric disorder that affects the lives of hundreds of millions of individuals around the globe. Even today, researchers debate if morphological alterations in the brain are linked to MDD, likely due t

Externí odkaz: http://arxiv.org/abs/2311.11046

Inhibitory Efficacy of Thymus vulgaris and Origanum onites Essential Oils on Enterococcus faecalis Biofilm

Autor: Didem SAKARYALI UYAR, Aylin ÜSKÜDAR GÜÇLÜ

Publikováno v: Bezmiâlem Science, Vol 12, Iss 4, Pp 450-455 (2024)

Objective: The crucial aim of irrigation solutions used in root canal treatments is the elimination of biofilm which is considered an important virulence factor of Enterococcusfaecalis. Essential oils have been investigated to understand their effica

Externí odkaz: https://doaj.org/article/4d977474b45044a9a0e2c853b58ca0ba

Evaluation of the Central Copper Contact Pin Effect in High-Energy Region in Gamma-ray Spectrometry

Autor: Uyar, Esra

The detector must be modeled in the most accurate way when Monte Carlo simulation method is used for efficiency calculation in gamma-ray spectrometric studies. This study aims to investigate the effect of the copper contact pin inside the detector on

Externí odkaz: http://arxiv.org/abs/2308.02518