Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

Autor: Nicole M. Scott, Olivia U. Mason, Julian L. Fortney, Antonio Gonzalez, Terry C. Hazen, Emmanuel Prestat, Janet K. Jansson, Diogo Jurelevicius, Nicholas J. Bouskill, William T. Stringfellow, Rob Knight, Sharon Borglin, Dominique C. Joyner, Jacob Bælum, Lisa Alvarez-Cohen, Jack A. Gilbert, Jeffrey A. Kimbrel, Adam Robbins-Pianka

Publikováno v: The ISME journal, vol 8, iss 7
Mason, O U, Scott, N M, Gonzalez, A, Robbins-Pianka, A, Bælum, J, Kimbrel, J, Bouskill, N J, Prestat, E, Borglin, S, Joyner, D C, Fortney, J L, Jurelevicius, D, Stringfellow, W T, Alvarez-Cohen, L, Hazen, T C, Knight, R, Gilbert, J A & Jansson, J K 2014, ' Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill ', I S M E Journal, vol. 8, no. 7, pp. 1464-1475 . https://doi.org/10.1038/ismej.2013.254
The ISME Journal
Mason, OU; Scott, NM; Gonzalez, A; Robbins-Pianka, A; Bælum, J; Kimbrel, J; et al.(2014). Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME Journal, 8(7), 1464-1475. doi: 10.1038/ismej.2013.254. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/3br5f2nd

The Deepwater Horizon (DWH) oil spill in the spring of 2010 resulted in an input of ∼4.1 million barrels of oil to the Gulf of Mexico; >22% of this oil is unaccounted for, with unknown environmental consequences. Here we investigated the impact of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5d440d525b0dfc747b8355fb0c88d312
https://escholarship.org/uc/item/3br5f2nd

Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire

Autor: Alexey Dudnik, Robert Dudler

Publikováno v: Dudnik, A & Dudler, R 2014, ' Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire ', BMC Microbiology, vol. 14, 304 . https://doi.org/10.1186/s12866-014-0304-5
BMC Microbiology

Background Pseudomonas syringae is pathogenic to a large number of plant species. For host colonization and disease progression, strains of this bacterium utilize an array of type III-secreted effectors and other virulence factors, including small se

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a9229ebad5285df1a866fb1891399cff
https://orbit.dtu.dk/en/publications/12cb05c2-00f9-4a89-a796-d198a7a001a6

Non-essential genes from the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium

Autor: Matthew D. Rolfe, Line Elnif Thomsen, Marcel H. Zwietering, Maj-Britt Nielsen, Carmen Pin, Tjakko Abee, John Elmerdahl Olsen, Gitte Maegaard Knudsen, Henk Aarts, Jesper T. Rosenkrantz

Publikováno v: BMC Microbiology, 13
BMC Microbiology
Rosenkrantz, J T, Aarts, H, Abee, T, Rolfe, M D, Knudsen, G M, Nielsen, M-B, Thomsen, L E, Zwietering, M H, Olsen, J E & Pin, C 2013, ' Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium ', B M C Microbiology, vol. 13, no. 1, 394 . https://doi.org/10.1186/1471-2180-13-294
BMC Microbiology 13 (2013)

Background: Salmonella Typhimurium is an important pathogen of human and animals. It shows a broad growth range and survives in harsh conditions. The aim of this study was to analyze transcriptional responses to a number of growth and stress conditio

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e540934e4921069cc506299dd9060297
https://research.wur.nl/en/publications/non-essential-genes-from-the-hubs-of-genome-scale-protein-functio

Synthetic Promoter Library for Modulation of Actinorhodin Production in Streptomyces coelicolor A3(2)

Autor: Anna Eliasson Lantz, Alessandro Fazio, Christopher T. Workman, Ivan Mijakovic, Sujata Vijay Sohoni

Publikováno v: PLoS ONE
Sohoni, S V, Fazio, A, Workman, C, Mijakovic, I & Eliasson Lantz, A 2014, ' Synthetic Promoter Library for Modulation of Actinorhodin Production in Streptomyces coelicolor A3(2) ', PLOS ONE, vol. 9, no. 6, e99701 . https://doi.org/10.1371/journal.pone.0099701
PLoS ONE, Vol 9, Iss 6, p e99701 (2014)

The objective of this study was the application of the synthetic promoter library (SPL) technology for modulation of actinorhodin production in Streptomyces coelicolor A3(2). The SPL technology was used to optimize the expression of a pathway specifi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6e555afbab1a7ed8cf2ce2f138ebf46
https://doi.org/10.1371/journal.pone.0099701

Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival

Autor: Frank Møller Aarestrup, Roy R. Chaudhuri, Rolf Sommer Kaas, Mark A. Holmes, Henrik Hasman, Mette Theilgaard Christiansen

Publikováno v: BASE-Bielefeld Academic Search Engine
PLoS ONE, Vol 9, Iss 2, p e89018 (2014)
Christiansen, M T, Kaas, R S, Chaudhuri, R R, Holmes, M A, Hasman, H & Aarestrup, F M 2014, ' Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival ', PLOS ONE, vol. 9, no. 2, e89018 . https://doi.org/10.1371/journal.pone.0089018
PLoS ONE

Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) Sequence Type 398 (ST398) is an opportunistic pathogen that is able to colonize and cause disease in several animal species including humans. To better understand the adaptati

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::320301f55051b68112ca2ed6bfc44f4f
http://orbit.dtu.dk/en/publications/genomewide-highthroughput-screening-to-investigate-essential-genes-involved-in-methicillinresistant-staphylococcus-aureus-sequence-type-398-survival(85d0282f-6c07-4111-ab03-3ce9eec99e9f).html