Zobrazeno 1 - 10
of 63
pro vyhledávání: '"Škunca, Nives"'
Autor:
Supek, Fran, Škunca, Nives
Contemporary techniques in biology produce readouts for large numbers of genes simultaneously, the typical example being differential gene expression measurements. Moreover, those genes are often richly annotated using GO terms that describe gene fun
Externí odkaz:
http://arxiv.org/abs/1602.07103
Publikováno v:
The Gene Ontology Handbook (Springer, New York), 25-37 (2016)
The Gene Ontology (GO) project is the largest resource for cataloguing gene function. The combination of solid conceptual underpinnings and a practical set of features have made the GO a widely adopted resource in the research community and an essent
Externí odkaz:
http://arxiv.org/abs/1602.01876
Autor:
Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed ME, Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, C., Dukka B K., Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Hieta, Reija, Legge, Duncan, Lovering, Ruth C, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E, Pavlidis, Paul, Feng, Shou, Cejuela, Juan M, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio, del Pozo, Angela, Fernández, José M, Maietta, Paolo, Valencia, Alfonso, Tress, Michael L, Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W, van Dijk, Aalt DJ, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C, Vencio, Ricardo ZN, Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael JE, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, O'Donovan, Claire, Robinson, Peter N, Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Orengo, Christine A, Rost, Burkhard, Greene, Casey S, Mooney, Sean D, Friedberg, Iddo, Radivojac, Predrag
Background: The increasing volume and variety of genotypic and phenotypic data is a major defining characteristic of modern biomedical sciences. At the same time, the limitations in technology for generating data and the inherently stochastic nature
Externí odkaz:
http://arxiv.org/abs/1601.00891
Autor:
Ravenhall, Matt1, Škunca, Nives2,3, Lassalle, Florent1, Dessimoz, Christophe1,4 c.dessimoz@ucl.ac.uk
Publikováno v:
PLoS Computational Biology. May2015, Vol. 11 Issue 5, p1-16. 16p. 1 Diagram, 1 Graph.
Autor:
Škunca, Nives1,2,3 skuncan@inf.ethz.ch, Dessimoz, Christophe2,3 c.dessimoz@ucl.ac.uk
Publikováno v:
PLoS ONE. Feb2015, Vol. 10 Issue 2, p1-13. 13p.
Autor:
Forslund, Kristoffer, Pereira, Cécile, Capella-Gutiérrez, Salvador, da Silva, Alan Sousa, Altenhoff, Adrian, Huerta-Cepas, Jaime, Muffato, Matthieu, Patricio, Mateus, Vandepoele, Klaas, Ebersberger, Ingo, Blake, Judith, Fernández Breis, Jesualdo Tomás, Boeckmann, Brigitte, Gabaldon, Toni, Sonnhammer, Erik, Dessimoz, Christophe, Lewis, Suzanna, Bello, Carla, Briois, Sébastien, Chalstrey, Edward, Chiba, Hirokazu, Conchillo-Solé, Oscar, Daubin, Vincent, DeLuca, Todd, Dufayard, Jean-François, Durand, Dannie, Fernández-Breis, Jesualdo Tomás, Glover, Natasha, Hauser, Alexander, Heller, Davide, Kaduk, Mateus, Koch, Jan, Koonin, Eugene, Kriventseva, Evgenia, Kuraku, Shigehiro, Lecompte, Odile, Lespinet, Olivier, Levy, Jeremy, Liebeskind, Benjamin, Linard, Benjamin, Marcet-Houben, Marc, Kauffmann, Martin, McWhite, Claire, Mekhedov, Sergei, Moretti, Sebastien, Müller, Steven, Nadia, El-Mabrouk, Notredame, Cedric, Penel, Simon, Pilizota, Ivana, Redestig, Henning, Robinson-Rechavi, Marc, Schreiber, Fabian, Sjölander, Kimmen, Škunca, Nives, Steinegger, Martin, Szklarczyk, Damian, Thomas, Paul, Thuer, Ernst, Train, Clément, Uchiyama, Ikuo, Wittwer, Lucas, Xenarios, Ioannis, Yates, Bethan, Zdobnov, Evgeny, Waterhouse, Robert
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2018, 34 (2), pp.323-329. ⟨10.1093/bioinformatics/btx542⟩
Bioinformatics, 2018, 34 (2), pp.323-329. ⟨10.1093/bioinformatics/btx542⟩
Bioinformatics, Oxford University Press (OUP), 2018, 34 (2), pp.323-329. 〈10.1093/bioinformatics/btx542〉
Bioinformatics, Oxford University Press (OUP), 2018, 34 (2), pp.323-329. ⟨10.1093/bioinformatics/btx542⟩
Bioinformatics, 2018, 34 (2), pp.323-329. ⟨10.1093/bioinformatics/btx542⟩
Bioinformatics, Oxford University Press (OUP), 2018, 34 (2), pp.323-329. 〈10.1093/bioinformatics/btx542〉
International audience; The Quest for Orthologs (QfO) is an open collaboration framework for experts in comparative phylogenomics and related research areas who have an interest in highly accurate orthology predictions and their applications. We here
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d06fa7d88f3f9f36a00153d667728ca4
https://hal.archives-ouvertes.fr/hal-01758841
https://hal.archives-ouvertes.fr/hal-01758841
Autor:
Dessimoz, Christophe, Gabaldón, Toni, Roos, David S., Sonnhammer, Erik L. L., Herrero, Javier, Altenhoff, Adrian, Apweiler, Rolf, Ashburner, Michael, Blake, Judith, Boeckmann, Brigitte, Bridge, Alan, Bruford, Elspeth, Cherry, Mike, Conte, Matthieu, Dannie, Durand, Datta, Ruchira, Domelevo Entfellner, Jean-Baka, Ebersberger, Ingo, Galperin, Michael, Joseph, Jacob, Koestler, Tina, Kriventseva, Evgenia, Lecompte, Odile, Leunissen, Jack, Lewis, Suzanna, Linard, Benjamin, Livstone, Michael S., Lu, Hui-Chun, Martin, Maria, Mazumder, Raja, Messina, David, Miele, Vincent, Muffato, Matthieu, Perrière, Guy, Punta, Marco, Roos, David, Rouard, Mathieu, Schmitt, Thomas, Schreiber, Fabian, Silva, Alan, Sjölander, Kimmen, Škunca, Nives, Sonnhammer, Erik, Stanley, Eleanor, Szklarczyk, Radek, Thomas, Paul, Uchiyama, Ikuo, Van Bel, Michiel, Vandepoele, Klaas, Vilella, Albert J., Yates, Andrew, Zdobnov, Evgeny
The identification of orthologs—genes pairs descended from a common ancestor through speciation, rather than duplication—has emerged as an essential component of many bioinformatics applications, ranging from the annotation of new genomes to expe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______805::4f608a3fc549ac0ff0ce1f7e7d39e199
http://doc.rero.ch/record/292993/files/bts050.pdf
http://doc.rero.ch/record/292993/files/bts050.pdf
Autor:
Altenhoff, Adrian M, Škunca, Nives, Glover, Natasha, Train, Clément-Marie, Sueki, Anna, Piližota, Ivana, Gori, Kevin, Tomiczek, Bartlomiej, Müller, Steven, Redestig, Henning, Gonnet, Gaston H, Dessimoz, Christophe
Publikováno v:
Nucleic Acids Research, 43 (D1)
The Orthologous Matrix (OMA) project is a method and associated database inferring evolutionary relationships amongst currently 1706 complete proteomes (i.e. the protein sequence associated for every protein-coding gene in all genomes). In this updat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::af6a39f9597dde44b66c6ac774fd9255
http://doc.rero.ch/record/296445/files/gku1158.pdf
http://doc.rero.ch/record/296445/files/gku1158.pdf
Autor:
Škunca, Nives1,2,3 (AUTHOR) skuncan@inf.ethz.ch, Bošnjak, Matko3,4 (AUTHOR), Kriško, Anita5 (AUTHOR), Panov, Panče6 (AUTHOR), Džeroski, Sašo6,7,8 (AUTHOR), Šmuc, Tomislav3 (AUTHOR), Supek, Fran3 (AUTHOR)
Publikováno v:
PLoS Computational Biology. Jan2013, Vol. 9 Issue 1, p1-14. 14p. 1 Color Photograph, 1 Diagram, 5 Graphs.
Publikováno v:
PLoS Computational Biology. May2012, Vol. 8 Issue 5, p1-11. 11p.