Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Éric Bapteste"'
Publikováno v:
mSystems, Vol 5, Iss 5 (2020)
ABSTRACT The bacterial candidate phyla radiation (CPR) and the archaeal DPANN superphylum are two novel lineages that have substantially expanded the tree of life due to their large phylogenetic diversity. Because of their ultrasmall size, reduced ge
Externí odkaz:
https://doaj.org/article/f553c72277bb47179018c744e5a8c18c
Autor:
Etienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François-Joseph Lapointe
Publikováno v:
PLoS ONE, Vol 11, Iss 8, p e0161474 (2016)
Various types of genome and gene similarity networks along with their characteristics have been increasingly used for retracing different kinds of evolutionary and ecological relationships. Here, we present a new polynomial time algorithm and the cor
Externí odkaz:
https://doaj.org/article/3363782bcd224b70a1f5d3840058b547
Publikováno v:
Archaea, Vol 1, Iss 5, Pp 353-363 (2005)
We used a phylogenetic approach to analyze the evolution of methanogenesis and methanogens. We show that 23 vertically transmitted ribosomal proteins do not support the monophyly of methanogens, and propose instead that there are two distantly relate
Externí odkaz:
https://doaj.org/article/2b6464b68f3546b1b8d15510c7fd73fd
Publikováno v:
Trends in microbiology. 28(4)
Microbiology has unraveled rich evidence of ongoing reticulate evolutionary processes and complex interactions both within and between cells. These phenomena feature real biological networks, which can logically be analyzed using network-based tools.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::f59bfcdc73b0a280741eb7ee0b328df4
https://pubmed.ncbi.nlm.nih.gov/31866140
https://pubmed.ncbi.nlm.nih.gov/31866140
Autor:
Shifu Aggarwal, Elaine Huang, Hackwon Do, Nishanth Makthal, Yanyan Li, Eric Bapteste, Philippe Lopez, Charles Bernard, Muthiah Kumaraswami
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-13 (2023)
Abstract The human pathogen Streptococcus pyogenes secretes a short peptide (leaderless communication peptide, LCP) that mediates intercellular communication and controls bacterial virulence through interaction with its receptor, RopB. Here, we show
Externí odkaz:
https://doaj.org/article/c2ddedc2e6cb463c820ed8bd9f6ce084
Autor:
Virginie Lemieux-Labonté, Chloé Vigliotti, Zoran Tadic, Beck Wehrle, Philippe Lopez, Eric Bapteste, François-Joseph Lapointe, Donovan P. German, Anthony Herrel
Publikováno v:
Microorganisms, Vol 10, Iss 8, p 1550 (2022)
Diet has been suggested to be an important driver of variation in microbiota composition in mammals. However, whether this is a more general phenomenon and how fast changes in gut microbiota occur with changes in diet remains poorly understood. Forty
Externí odkaz:
https://doaj.org/article/d73b14b5883e4760871f1e2baf88648c
Publikováno v:
Frontiers in Cell and Developmental Biology, Vol 8 (2020)
Genetically regulated cell death (RCD) occurs in all domains of life. In eukaryotes, the evolutionary origin of the mitochondrion and of certain forms of RCD, in particular apoptosis, are thought to coincide, suggesting a central general role for mit
Externí odkaz:
https://doaj.org/article/0c7ec7ca740744eba2e10a31e2748331
Autor:
Raphaël Méheust, Andrew K. Watson, François-Joseph Lapointe, R. Thane Papke, Philippe Lopez, Eric Bapteste
Publikováno v:
Genome Biology, Vol 19, Iss 1, Pp 1-12 (2018)
Abstract Background Haloarchaea, a major group of archaea, are able to metabolize sugars and to live in oxygenated salty environments. Their physiology and lifestyle strongly contrast with that of their archaeal ancestors. Amino acid optimizations, w
Externí odkaz:
https://doaj.org/article/ea7306f12d694824896eb749cd96f731
Autor:
Eric Bapteste, Philippe Huneman
Publikováno v:
BMC Biology, Vol 16, Iss 1, Pp 1-16 (2018)
Abstract The classic Darwinian theory and the Synthetic evolutionary theory and their linear models, while invaluable to study the origins and evolution of species, are not primarily designed to model the evolution of organisations, typically that of
Externí odkaz:
https://doaj.org/article/2db12352af964f9186d7c2c379c475db
Autor:
Raphaël Méheust, Debashish Bhattacharya, Jananan S. Pathmanathan, James O. McInerney, Philippe Lopez, Eric Bapteste
Publikováno v:
BMC Biology, Vol 16, Iss 1, Pp 1-18 (2018)
Abstract Background Eukaryotes evolved from the symbiotic association of at least two prokaryotic partners, and a good deal is known about the timings, mechanisms, and dynamics of these evolutionary steps. Recently, it was shown that a new class of n
Externí odkaz:
https://doaj.org/article/b6f0f7c2b0064cf7b108a0667eed3bb5