Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Élise Prieur-Gaston"'
Autor:
Vincent Sater, Pierre-Julien Viailly, Thierry Lecroq, Philippe Ruminy, Caroline Bérard, Élise Prieur-Gaston, Fabrice Jardin
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 2270-2280 (2020)
Motivation: With Next Generation Sequencing becoming more affordable every year, NGS technologies asserted themselves as the fastest and most reliable way to detect Single Nucleotide Variants (SNV) and Copy Number Variations (CNV) in cancer patients.
Externí odkaz:
https://doaj.org/article/d19bf484d8ca43d794f9a515e4f4f14f
Autor:
Vincent, Sater, Pierre-Julien, Viailly, Thierry, Lecroq, Élise, Prieur-Gaston, Élodie, Bohers, Mathieu, Viennot, Philippe, Ruminy, Hélène, Dauchel, Pierre, Vera, Fabrice, Jardin
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2493
The rapid transition from traditional sequencing methods to Next-Generation Sequencing (NGS) has allowed for a faster and more accurate detection of somatic variants (Single-Nucleotide Variant (SNV) and Copy Number Variation (CNV)) in tumor cells. NG
Autor:
Caroline Bérard, Thierry Lecroq, Fabrice Jardin, Vincent Sater, Pierre-Julien Viailly, Philippe Ruminy, Élise Prieur-Gaston
Publikováno v:
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Elsevier, 2020, 18, pp.2270-2280. ⟨10.1016/j.csbj.2020.08.011⟩
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 2270-2280 (2020)
Computational and Structural Biotechnology Journal, Elsevier, 2020, 18, pp.2270-2280. ⟨10.1016/j.csbj.2020.08.011⟩
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 2270-2280 (2020)
MotivationWith Next Generation Sequencing becoming more affordable every year, NGS technologies asserted themselves as the fastest and most reliable way to detect Single Nucleotide Variants (SNV) and Copy Number Variations (CNV) in cancer patients. T
Autor:
Vincent Sater, Pierre-Julien Viailly, Thierry Lecroq, Élise Prieur-Gaston, Élodie Bohers, Mathieu Viennot, Philippe Ruminy, Hélène Dauchel, Pierre Vera, Fabrice Jardin
Publikováno v:
Variant Calling ISBN: 9781071622926
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d739e9746a457881d5e8a5312c4289ce
https://doi.org/10.1007/978-1-0716-2293-3_14
https://doi.org/10.1007/978-1-0716-2293-3_14
Autor:
Jacqueline W. Daykin, Martine Léonard, Élise Prieur-Gaston, Arnaud Lefebvre, Richard Groult, Thierry Lecroq, Yannick Guesnet
Publikováno v:
Theoretical Computer Science
Theoretical Computer Science, Elsevier, 2016, ⟨10.1016/j.tcs.2016.05.028⟩
Daykin, J W, Groult, R, Guesnet, Y, Lecroq, T, Lefebvre, A, Léonard, M & Prieur-Gaston, É 2016, ' Binary block order Rouen transform ', Theoretical Computer Science . https://doi.org/10.1016/j.tcs.2016.05.028
Theoretical Computer Science, Elsevier, 2016, ⟨10.1016/j.tcs.2016.05.028⟩
Daykin, J W, Groult, R, Guesnet, Y, Lecroq, T, Lefebvre, A, Léonard, M & Prieur-Gaston, É 2016, ' Binary block order Rouen transform ', Theoretical Computer Science . https://doi.org/10.1016/j.tcs.2016.05.028
Novel twin binary Burrows-Wheeler type transforms are introduced.The transforms are defined for Lyndon-like B-words which apply binary block order.We call this approach the B-BWT Rouen Transform.These bijective Rouen Transforms and inverses are compu
Autor:
Philippe Ruminy, Fabrice Jardin, Hélène Dauchel, Élise Prieur-Gaston, Vincent Sater, Pierre Vera, Pierre-Julien Viailly, Mathieu Viennot, Elodie Bohers, Thierry Lecroq
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bioinformatics/btaa053⟩
Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bioinformatics/btaa053⟩
Motivation Next-generation sequencing has become the go-to standard method for the detection of single-nucleotide variants in tumor cells. The use of such technologies requires a PCR amplification step and a sequencing step, steps in which artifacts
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5ddff88263ca2bce4f1b3b147493a781
Autor:
Élise Prieur-Gaston, Fabrice Jardin, Hélène Dauchel, Thierry Lecroq, Vincent Sater, Pierre-Julien Viailly, Elodie Bohers, Pierre Vera, Philippe Ruminy, Mathieu Viennot
Next Generation Sequencing (NGS) has become the go-to standard method for the detection of Single Nucleotide Variants (SNV) in tumor cells. The use of such technologies requires a PCR amplification step and a sequencing step, steps in which artifacts
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c30c75191fdbf842747b2133bdcac9cf
https://doi.org/10.1101/775817
https://doi.org/10.1101/775817
Autor:
Thierry Lecroq, Yannick Guesnet, Jacqueline W. Daykin, Arnaud Lefebvre, Martine Léonard, Laurent Mouchard, Bruce W. Watson, Élise Prieur-Gaston, Richard Groult
Publikováno v:
Information Processing Letters
Information Processing Letters, Elsevier, 2019, 147, pp.82-87. ⟨10.1016/j.ipl.2019.03.003⟩
Information Processing Letters, Elsevier, 2019, 147, pp.82-87. ⟨10.1016/j.ipl.2019.03.003⟩
A degenerate or indeterminate string on an alphabet Σ is a sequence of non-empty subsets of Σ. Given a degenerate string t of length n and its Burrows–Wheeler transform we present a new method for searching for a degenerate pattern of length m in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::095d89bb612ea3258376cc590a25a566
https://hal-normandie-univ.archives-ouvertes.fr/hal-02113307
https://hal-normandie-univ.archives-ouvertes.fr/hal-02113307
Autor:
Alessio Langiu, Élise Prieur-Gaston, Gabriele Fici, Filippo Mignosi, Thierry Lecroq, Jarkko Peltomäki, Arnaud Lefebvre
Publikováno v:
Theoretical computer science 635 (2016): 16–34. doi:10.1016/j.tcs.2016.04.039
info:cnr-pdr/source/autori:Fici, Gabriele; Langiu, Alessio; Lecroq, Thierry; Lefebvre, Arnaud; Mignosi, Filippo; Peltomäki, Jarkko; Prieur-Gaston, Élise/titolo:Abelian powers and repetitions in Sturmian words/doi:10.1016%2Fj.tcs.2016.04.039/rivista:Theoretical computer science/anno:2016/pagina_da:16/pagina_a:34/intervallo_pagine:16–34/volume:635
Theoretical Computer Science
Theoretical Computer Science, Elsevier, 2016, 635, pp.16-34. ⟨10.1016/j.tcs.2016.04.039⟩
Fici, G, Langiu, A, Lecroq, T, Lefebvre, A, Mignosi, F, Peltomäki, J & Prieur-Gaston, É 2016, ' Abelian powers and repetitions in Sturmian words ', Theoretical Computer Science . https://doi.org/10.1016/j.tcs.2016.04.039
info:cnr-pdr/source/autori:Fici, Gabriele; Langiu, Alessio; Lecroq, Thierry; Lefebvre, Arnaud; Mignosi, Filippo; Peltomäki, Jarkko; Prieur-Gaston, Élise/titolo:Abelian powers and repetitions in Sturmian words/doi:10.1016%2Fj.tcs.2016.04.039/rivista:Theoretical computer science/anno:2016/pagina_da:16/pagina_a:34/intervallo_pagine:16–34/volume:635
Theoretical Computer Science
Theoretical Computer Science, Elsevier, 2016, 635, pp.16-34. ⟨10.1016/j.tcs.2016.04.039⟩
Fici, G, Langiu, A, Lecroq, T, Lefebvre, A, Mignosi, F, Peltomäki, J & Prieur-Gaston, É 2016, ' Abelian powers and repetitions in Sturmian words ', Theoretical Computer Science . https://doi.org/10.1016/j.tcs.2016.04.039
Richomme, Saari and Zamboni (J. Lond. Math. Soc. 83: 79-95, 2011) proved that at every position of a Sturmian word starts an abelian power of exponent $k$ for every $k > 0$. We improve on this result by studying the maximum exponents of abelian power
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92f85ad06f065b9feed476c54cd14447
https://hal.archives-ouvertes.fr/hal-01956122
https://hal.archives-ouvertes.fr/hal-01956122
Publikováno v:
Proceedings of the IEEE BIBM 2018 Workshop on Data Mining from Genomic Variants and Its Application to Genome-wide Analysis
Proceedings of the IEEE BIBM 2018 Workshop on Data Mining from Genomic Variants and Its Application to Genome-wide Analysis, Dec 2018, Madrid, Spain. pp.1772--1777
BIBM
Proceedings of the IEEE BIBM 2018 Workshop on Data Mining from Genomic Variants and Its Application to Genome-wide Analysis, Dec 2018, Madrid, Spain. pp.1772--1777
BIBM
With the advent of high-throughput sequencing technologies there are more and more genomic sequences of individuals of the same species available. These sequences only differ by a very small amount of variations. There is thus a strong need for effic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0ed3430dabb0be6c093920b5d47319b4
https://hal.archives-ouvertes.fr/hal-01956537
https://hal.archives-ouvertes.fr/hal-01956537