Zobrazeno 71 - 80
of 298
pro vyhledávání: '"Timothy P. L. Smith"'
Autor:
Richard G. Tait, Eduardo Casas, Robert A. Cushman, Gary L. Bennett, Harvey C. Freetly, Anthony K. McNeel, Timothy P. L. Smith
Publikováno v:
Theriogenology. 173
Polymorphisms in μ-calpain (CAPN1) that beneficially associate with beef tenderness are reported to antagonistically associate with calving day in beef heifers and post-partum interval to estrus in beef cows. We, therefore, hypothesized that a molec
Autor:
Brian V. Lubbers, James L. Bono, Gennie Schuller, Brad J. White, Carol G. Chitko-McKown, Aaron M. Dickey, Michael L. Clawson, Robert L. Larson, Michael T. Sweeney, Timothy P. L. Smith, Jochen Blom, Dayna M. Brichta-Harhay, Robert W. Murray, Sarah F. Capik, Keith D. DeDonder, Michael D. Apley
Publikováno v:
BMC Microbiology, Vol 20, Iss 1, Pp 1-18 (2020)
BMC Microbiology
BMC Microbiology
Background Mannheimia haemolytica strains isolated from North American cattle have been classified into two genotypes (1 and 2). Although members of both genotypes have been isolated from the upper and lower respiratory tracts of cattle with or witho
Autor:
Jeffrey Yuan, Pavel A. Pevzner, Evgeny Polevikov, Mikhail Rayko, Kristen L. Kuhn, Alexey Gurevich, Derek M. Bickhart, Mikhail Kolmogorov, Bahar Behsaz, Sung Bong Shin, Timothy P. L. Smith
Publikováno v:
Nature methods. 17(11)
Long-read sequencing technologies have substantially improved the assemblies of many isolate bacterial genomes as compared to fragmented short-read assemblies. However, assembling complex metagenomic datasets remains difficult even for state-of-the-a
Autor:
George E. Liu, Wilson Nandolo, Christine Couldrey, Elizabeth Tseng, Wenli Li, Wai Yee Low, Arang Rhie, Robert D. Schnabel, Brenda M. Murdoch, Richard Hall, Benjamin D. Rosen, Stephanie D. McKay, Troy N. Rowan, Sergey Koren, Adam M. Phillippy, Warren M Snelling, John A. Hammond, Tara G. McDaneld, John C. Schwartz, Juan F. Medrano, Jay Ghurye, Françoise Thibaud-Nissen, Derek M. Bickhart, Darren E. Hagen, Christine G. Elsik, Timothy P. L. Smith, Sebastian J. Schultheiss, Christian Dreischer, Steven G. Schroeder, John B. Cole, Curtis P. Van Tassell, Jinna Hoffman, Aleksey V. Zimin
Publikováno v:
GigaScience, vol 9, iss 3
GigaScience
GigaScience
Author(s): Rosen, Benjamin D; Bickhart, Derek M; Schnabel, Robert D; Koren, Sergey; Elsik, Christine G; Tseng, Elizabeth; Rowan, Troy N; Low, Wai Y; Zimin, Aleksey; Couldrey, Christine; Hall, Richard; Li, Wenli; Rhie, Arang; Ghurye, Jay; McKay, Steph
Autor:
Dayna M. Harhay, Larry A. Kuehn, John W. Keele, Keith D. DeDonder, Michael D. Apley, Brooke A Clemmons, Madison T Henniger, Gregory P. Harhay, Tara G. McDaneld, Sarah F. Capik, Timothy P. L. Smith, Brian V. Lubbers, Phillip R. Myer
Publikováno v:
PLoS ONE, Vol 15, Iss 7, p e0235498 (2020)
PLoS ONE
PLoS ONE
Surveys of microbial populations in environmental niches of interest often utilize sequence variation in the gene encoding the ribosomal small subunit (the 16S rRNA gene). Generally, these surveys target the 16S genes using semi-degenerate primers to
Autor:
Timothy P L Smith
Publikováno v:
J Anim Sci
The early impact of genomic research on animal agriculture was relatively modest, as it proved difficult to translate quantitative trait loci mapping to industrial application. Fortunately, developments in technology have facilitated the application
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7949f8fb8079ac90256c235715c9c4aa
https://europepmc.org/articles/PMC6897736/
https://europepmc.org/articles/PMC6897736/
Autor:
William Chow, Christopher K. Tuggle, Nancy Manchanda, David A. Hume, Bronwen Aken, Mick Watson, Gary A. Rohrer, Adam M. Phillippy, Laurie A. Rund, Dan J. Nonneman, Sergey Koren, Heather Finlayson, Elizabeth Tseng, Darren K. Griffin, Gregory Hannum, Rebecca E. O’Connor, Steven G. Schroeder, Amanda Warr, Lel Eory, Haibo Liu, Richard Hall, Thibaut Hourlier, Richard Talbot, Kristi Kim, Paul Flicek, Fergal J. Martin, Carole A. Sargent, Kerstin Howe, Alan Archibald, Timothy P L Smith, Nabeel A. Affara, Osagie G. Izuogu, Carlos García Girón, Ariel S. Schwartz, Benjamin M. Skinner, Benjamin D. Rosen, Konstantinos Billis, Derek M. Bickhart, Hamid Beiki, Lawrence B. Schook
Publikováno v:
GigaScience
Warr, A, Affara, N, Aken, B, Beiki, H, Bickhart, D M, Billis, K, Chow, W, Eory, L, Finlayson, H A, Flicek, P, Girón, C G, Griffin, D K, Hall, R, Hannum, G, Hourlier, T, Howe, K, Hume, D A, Izuogu, O, Kim, K, Koren, S, Liu, H, Manchanda, N, Martin, F J, Nonneman, D J, O'Connor, R E, Phillippy, A M, Rohrer, G A, Rosen, B D, Rund, L A, Sargent, C A, Schook, L B, Schroeder, S G, Schwartz, A S, Skinner, B M, Talbot, R, Tseng, E, Tuggle, C K, Watson, M, Smith, T P L & Archibald, A L 2020, ' An improved pig reference genome sequence to enable pig genetics and genomics research ', GigaScience, vol. 9, no. 6, pp. 1-14 . https://doi.org/10.1093/gigascience/giaa051
Warr, A, Affara, N, Aken, B, Beiki, H, Bickhart, D M, Billis, K, Chow, W, Eory, L, Finlayson, H A, Flicek, P, Girón, C G, Griffin, D K, Hall, R, Hannum, G, Hourlier, T, Howe, K, Hume, D A, Izuogu, O, Kim, K, Koren, S, Liu, H, Manchanda, N, Martin, F J, Nonneman, D J, O'Connor, R E, Phillippy, A M, Rohrer, G A, Rosen, B D, Rund, L A, Sargent, C A, Schook, L B, Schroeder, S G, Schwartz, A S, Skinner, B M, Talbot, R, Tseng, E, Tuggle, C K, Watson, M, Smith, T P L & Archibald, A L 2020, ' An improved pig reference genome sequence to enable pig genetics and genomics research ', GigaScience, vol. 9, no. 6, pp. 1-14 . https://doi.org/10.1093/gigascience/giaa051
Background The domestic pig (Sus scrofa) is important both as a food source and as a biomedical model given its similarity in size, anatomy, physiology, metabolism, pathology, and pharmacology to humans. The draft reference genome (Sscrofa10.2) of a
Autor:
Jens Keilwagen, Zane Colaric, Daniel Enosi Tuipulotu, Olga Dudchenko, Robert A. Zammit, J. William O. Ballard, Matthew A. Field, Eva K. F. Chan, Ozren Bogdanovic, Kirston Barton, Martin A. Smith, Andre E. Minoche, Ruth J. Lyons, Timothy P. L. Smith, Benjamin D. Rosen, Richard Edwards, Arina D. Omer, Vanessa M. Hayes, Ksenia Skvortsova, Erez Lieberman Aiden
Publikováno v:
GigaScience
Background The German Shepherd Dog (GSD) is one of the most common breeds on earth and has been bred for its utility and intelligence. It is often first choice for police and military work, as well as protection, disability assistance, and search-and
Autor:
Richard E. Green, Theodore S. Kalbfleisch, Arang Rhie, Peter H. Hackett, Nicholas Maurer, Timothy P. L. Smith, Timothy Hardy, Adam M. Phillippy, Jessica L. Petersen, Edward S. Rice, Derek M. Bickhart, Michael P. Heaton, Sergey Koren, Brian L. Vander Ley, Benjamin D. Rosen
Publikováno v:
GigaScience
Background The development of trio binning as an approach for assembling diploid genomes has enabled the creation of fully haplotype-resolved reference genomes. Unlike other methods of assembly for diploid genomes, this approach is enhanced, rather t
Autor:
Richard G. Tait, Eduardo Casas, Gary L. Bennett, Harvey C. Freetly, Anthony K. McNeel, Robert A. Cushman, Timothy P. L. Smith
Publikováno v:
Theriogenology. 113:1-7
Genetic marker effects and type of inheritance are estimated with poor precision when minor marker allele frequencies are low. An Angus population was subjected to marker assisted selection for multiple years to equalize CAPN1 haplotypes, CAST, and G