Zobrazeno 11 - 20
of 25
pro vyhledávání: '"Alessio Milanese"'
Autor:
Hans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, Nicolai Karcher, Quentin Clayssen, Marisa Isabell Metzger, Jakob Wirbel, Peer Bork, Daniel R. Mende, Georg Zeller, Shinichi Sunagawa
BackgroundTaxonomic profiling is a fundamental task in microbiome research that aims to detect and quantify the relative abundance of microorganisms in biological samples. Available methods using shotgun metagenomic data generally depend on the avail
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e282d9f68e1fb6fae3c9ec0f20636861
https://doi.org/10.1101/2021.04.20.440600
https://doi.org/10.1101/2021.04.20.440600
Autor:
Quentin Clayssen, Georg Zeller, Martin Larralde, Patrick Wincker, Chris Bowler, Peer Bork, Satria A. Kautsar, Jörn Piel, Serina L. Robinson, Clarissa C. Forneris, Alessio Milanese, Shinichi Sunagawa, Matthew B. Sullivan, Guillem Salazar, Pablo Sánchez, Silvia G. Acinas, Laura M. Carroll, Hans-Joachim Ruscheweyh, Lucas Paoli, Tom O. Delmont, Dylan R. Cronin, Ahmed A. Zayed, Daniel Gehrig
SummaryMicrobes are phylogenetically and metabolically diverse. Yet capturing this diversity, assigning functions to host organisms and exploring the biosynthetic potential in natural environments remains challenging. We reconstructed >25,000 draft g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d8813d5cd53045e69c399ffdcf421e70
https://doi.org/10.1101/2021.03.24.436479
https://doi.org/10.1101/2021.03.24.436479
Autor:
Bas Teusink, Daniel Machado, Vladimir Benes, Alessio Milanese, Kiran Raosaheb Patil, Jens Nielsen, Georg Zeller, Sonja Blasche, Yongkyu Kim, Rute Neves, Uwe Sauer, Ruben A. T. Mars, Eleni Kafkia, Maria Maansson
Publikováno v:
NATURE MICROBIOLOGY, 6(2), 196-208. Nature Publishing Group
Blasche, S, Kim, Y, Mars, R A T, Machado, D, Maansson, M, Kafkia, E, Milanese, A, Zeller, G, Teusink, B, Nielsen, J, Benes, V, Neves, R, Sauer, U & Patil, K R 2021, ' Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community ', NATURE MICROBIOLOGY, vol. 6, no. 2, pp. 196-208 . https://doi.org/10.1038/s41564-020-00816-5
Nature microbiology
Blasche, S, Kim, Y, Mars, R A T, Machado, D, Maansson, M, Kafkia, E, Milanese, A, Zeller, G, Teusink, B, Nielsen, J, Benes, V, Neves, R, Sauer, U & Patil, K R 2021, ' Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community ', NATURE MICROBIOLOGY, vol. 6, no. 2, pp. 196-208 . https://doi.org/10.1038/s41564-020-00816-5
Nature microbiology
Microbial communities often undergo intricate compositional changes yet also maintain stable coexistence of diverse species. The mechanisms underlying long-term coexistence remain unclear as system-wide studies have been largely limited to engineered
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ef70e2d3759da1b378113d80b1b861c
https://research.vu.nl/en/publications/525c8e63-ec7a-471b-bdf8-03dc709d11c7
https://research.vu.nl/en/publications/525c8e63-ec7a-471b-bdf8-03dc709d11c7
Autor:
Lucas Paoli, Daniel R Mende, Shinichi Sunagawa, Alessio Milanese, Georg Zeller, Anna Sintsova, Hans-Joachim Ruscheweyh
Publikováno v:
Current Protocols, 1 (8)
The mOTU profiler, or mOTUs for short, is a software tool that enables the profiling of microbial communities in terms of their taxonomic composition, relative abundance of metabolically active members, and diversity of strain populations. To this en
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85b5ad416f1c74635ca60199876b6aae
Autor:
Georg Zeller, Gabriele I. Stangl, Rudolf Kaaks, Frank Hirche, Ruth Schübel, Theron Johnson, Solomon A Sowah, Romy Kirsten, Cornelia M. Ulrich, Alessio Milanese, Tilman Kühn, Mirja Grafetstätter
Publikováno v:
Nutrients
Nutrients, Vol 12, Iss 2, p 452 (2020)
Nutrients, 12 (2)
Volume 12
Issue 2
Nutrients, Vol 12, Iss 2, p 452 (2020)
Nutrients, 12 (2)
Volume 12
Issue 2
Gut microbial-derived short-chain fatty acids (SCFAs) may regulate energy homeostasis and exert anti-carcinogenic, immunomodulatory and anti-inflammatory effects. Smaller trials indicate that dietary weight loss may lead to decreased SCFA production,
Autor:
Tisya Banerjee, Camille V. Goemans, Elisabetta Cacace, Exene Erin Anderson, Lisa A. Maier, Sofia K. Forslund, Mihaela Pruteanu, Michael Kuhn, Athanasios Typas, Jakob Wirbel, Kiran Raosaheb Patil, Georg Zeller, Alessio Milanese, Ulrike Loeber, Peer Bork
Antibiotics are used for fighting pathogens, but also target our commensal bacteria as a side effect, disturbing the gut microbiota composition and causing dysbiosis and disease1-3. Despite this well-known collateral damage, the activity spectrum of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3129571da1c3c98cdcc57905bdf40dbb
https://doi.org/10.1101/2020.01.09.893560
https://doi.org/10.1101/2020.01.09.893560
Autor:
Pascal Hingamp, Paul I. Costea, Renato J. Alves, Lucas Paoli, Alessio Milanese, Shinichi Sunagawa, Miguelangel Cuenca, Thomas Schmidt, Hans-Joachim Ruscheweyh, Daniel R. Mende, Georg Zeller, Luis Pedro Coelho, Jaime Huerta-Cepas, Alexandre Almeida, Alex L. Mitchell, Peer Bork, Robert D. Finn, Guillem Salazar
Publikováno v:
Nature Communications
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-08844-4⟩
Nature Communications, 10 (1)
Nature Communications, Nature Publishing Group, 2019, 10 (1), ⟨10.1038/s41467-019-08844-4⟩
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-08844-4⟩
Nature Communications, 10 (1)
Nature Communications, Nature Publishing Group, 2019, 10 (1), ⟨10.1038/s41467-019-08844-4⟩
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Metagenomic sequencing has greatly improved our ability to profile the composition of environmental and host-associated microbial communities. However, the dependency of most methods on reference genomes, which are currently unavailable for a substan
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::21492f721808e783cfb9cb5c6e215b83
https://hal.science/hal-02281129
https://hal.science/hal-02281129
Autor:
Lisa A. Maier, Michael B. Zimmermann, Ulrike Löber, Tisya Banerjee, Bärbel Stecher, Camille V. Goemans, Patrick Müller, Elisabetta Cacace, Sofia K. Forslund, Jakob Wirbel, Boyao Zhang, Cordula Gekeler, Exene Erin Anderson, Peer Bork, Michael Kuhn, Athanasios Typas, Mihaela Pruteanu, Claudia Eberl, Sarela García-Santamarina, Kiran Raosaheb Patil, Georg Zeller, Alessio Milanese
Publikováno v:
Nature
Antibiotics are used to fight pathogens but also target commensal bacteria, disturbing the composition of gut microbiota and causing dysbiosis and disease1. Despite this well-known collateral damage, the activity spectrum of different antibiotic clas
Autor:
Pasquina Marzola, Giamaica Conti, Elena Nicolato, Silvia Mannucci, Roberto Bassi, Leonardo Ghin, Stefano Tambalo, Anna Carboncino, Alessio Milanese, Andrea Sbarbati, Donatella Benati, Maria Rosaria Marinozzi
Publikováno v:
Contrast Media & Molecular Imaging, 2018
Contrast Media & Molecular Imaging
Contrast Media & Molecular Imaging, Vol 2018 (2018)
Contrast Media & Molecular Imaging
Contrast Media & Molecular Imaging, Vol 2018 (2018)
Magnetic fluid hyperthermia (MFH) with chemically synthesized nanoparticles is currently used in clinical trials as it destroys tumor cells with an extremely localized deposition of thermal energy. In this paper, we investigated an MFH protocol based
Autor:
Shinichi Sunagawa, Lucas Paoli, Daniel R Mende, Ivica Letunic, Jaime Huerta-Cepas, Askarbek Nurlanuly Orakov, Oleksandr M. Maistrenko, Peer Bork, Sofia K. Forslund, Georg Zeller, Luis Pedro Coelho, Ana Hernández-Plaza, Thomas Schmidt, Alessio Milanese
Publikováno v:
Nucleic Acids Research, 48
Nucleic Acids Research
Nucleic Acids Research
Microbiology depends on the availability of annotated microbial genomes for many applications. Comparative genomics approaches have been a major advance, but consistent and accurate annotations of genomes can be hard to obtain. In addition, newer con