Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Garret Suen"'
Autor:
Kiranmayee Bakshy, Mick Watson, Jay Ghurye, Laura M. Cersosimo, Adam M. Phillippy, Seon Woo Kim, Sergey Koren, Bradd J. Haley, Cheryl Heiner, Maximilian O. Press, Garret Suen, Kevin Panke-Buisse, Curtis P. Van Tassell, Phillip R. Myer, Shawn T. Sullivan, Jo Ann S. Van Kessel, Mihai Pop, Paul J. Weimer, Ivan Liachko, Timothy P L Smith, Derek M. Bickhart
Publikováno v:
Bickhart, D M, Watson, M, Koren, S, Panke-Buisse, K, Cersosimo, L M, Press, M O, Van Tassell, C P, Van Kessel, J A S, Haley, B J, Kim, S W, Heiner, C, Suen, G, Bakshy, K, Liachko, I, Sullivan, S T, Myer, P R, Ghurye, J, Pop, M, Weimer, P J, Phillippy, A M & Smith, T P L 2019, ' Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation ', Genome Biology, vol. 20, no. 1, pp. 153 . https://doi.org/10.1186/s13059-019-1760-x
Genome Biology
Genome Biology, Vol 20, Iss 1, Pp 1-18 (2019)
Genome Biology
Genome Biology, Vol 20, Iss 1, Pp 1-18 (2019)
We describe a method that adds long-read sequencing to a mix of technologies used to assemble a highly complex cattle rumen microbial community, and provide a comparison to short read-based methods. Long-read alignments and Hi-C linkage between conti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6eaf640ae47686c2568f20146b5dc68
https://hdl.handle.net/20.500.11820/3ea149d6-dc95-41d9-bb33-de6bde774be3
https://hdl.handle.net/20.500.11820/3ea149d6-dc95-41d9-bb33-de6bde774be3
Publikováno v:
The Veterinary clinics of North America. Food animal practice. 34(3)
The milk microbiota is an intriguing area of research because milk with no bacterial growth in culture was long thought to be sterile. Recent DNA sequencing techniques have been developed that do not require bacteria to be culturable, and DNA from ne
Publikováno v:
Scientific Reports
Development of the dairy calf gastrointestinal tract (GIT) and its associated microbiota are essential for survival and milk production, as this community is responsible for converting plant-based feeds into accessible nutrients. However, little is k
Autor:
Marie E. Jetté, Kimberly A. Dill-McFarland, Alissa S. Hanshew, Susan L. Thibeault, Garret Suen
Publikováno v:
Scientific Reports
Prolonged diffuse laryngeal inflammation from smoking and/or reflux is commonly diagnosed as chronic laryngitis and treated empirically with expensive drugs that have not proven effective. Shifts in microbiota have been associated with many inflammat
Publikováno v:
Systematic and Applied Microbiology. 36:376-382
Members of the phylum Fibrobacteres are highly efficient cellulolytic bacteria, best known for their role in rumen function and as potential sources of novel enzymes for bioenergy applications. Despite being key members of ruminants and other digesti
Autor:
Kenneth F. Raffa, Brian H. Aukema, Sandye M. Adams, Nadir Erbilgin, Aaron S. Adams, Cameron R. Currie, Garret Suen, Frank O. Aylward
Publikováno v:
Applied and Environmental Microbiology. 79:3468-3475
The mountain pine beetle, Dendroctonus ponderosae , is a subcortical herbivore native to western North America that can kill healthy conifers by overcoming host tree defenses, which consist largely of high terpene concentrations. The mechanisms by wh
Autor:
Jo Anne Holley, Kaitlyn A. Mathis, Marie-Julie Favé, Reed M. Johnson, Richard Benton, Abderrahman Khila, Joseph G. Laird, Juergen Gadau, Carson Holt, Martin Helmkampf, Vincent Croset, Elizabeth Cash, Eran Elhaik, Aleksey V. Zimin, Kirk J. Grubbs, Ellen van Wilgenburg, Mark Yandell, Ehab Abouheif, Jennifer E. Placek, Brian R. Johnson, Hugh M. Robertson, Rick P. Overson, Joseph A. Moeller, Hao Hu, Chris Smith, Garret Suen, Kimberly K. O. Walden, Christine G. Elsik, Elissa L. Suhr, Darren E. Hagen, Dan Graur, Cameron R. Currie, Shu Tao, Rin Nakamura, Jay W. Kim, Monica Munoz-Torres, Justin T. Reese, Joshua D. Gibson, Lumi Viljakainen, Alexander L. Wild, Candice W. Torres, Ana Sofia Ibarraran Viniegra, Rajendhran Rajakumar, James A. Yorke, Vilaiwan M. Fernandes, Marguerite C. Murphy, Andrew V. Suarez, Neil D. Tsutsui, Christopher D. Smith, Surabhi Nigam
Ants are some of the most abundant and familiar animals on Earth, and they play vital roles in most terrestrial ecosystems. Although all ants are eusocial, and display a variety of complex and fascinating behaviors, few genomic resources exist for th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::412a33899c6152bd5e9ce4dbf526d0bd
https://ora.ox.ac.uk/objects/uuid:130b1f6e-0ec0-4429-aed1-262d9f67a595
https://ora.ox.ac.uk/objects/uuid:130b1f6e-0ec0-4429-aed1-262d9f67a595
Autor:
Katie L. Neil, Hannah V. Carey, Ryan J. Sprenger, Austin Zeng, Kimberly A. Dill-McFarland, Courtney C. Kurtz, Garret Suen
Publikováno v:
Molecular ecology. 23(18)
The gut microbiota plays important roles in animal nutrition and health. This relationship is particularly dynamic in hibernating mammals where fasting drives the gut community to rely on host-derived nutrients instead of exogenous substrates. We use
Autor:
Alejandra Valenzuela, Tanja Woyke, Sandra M. Adams, Cameron R. Currie, Michael Poulsen, Frank O. Aylward, Bradon R. McDonald, Rebeccah A. Schmidt, Lynne Goodwin, Garret Suen
Sphingomonads comprise a physiologically versatile group within the Alphaproteobacteria that includes strains of interest for biotechnology, human health, and environmental nutrient cycling. In this study, we compared 26 sphingomonad genome sequences
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b449b0f3750b8a2350fb6b2bc64e09a9
https://europepmc.org/articles/PMC3675938/
https://europepmc.org/articles/PMC3675938/
Autor:
Chris Smith, Robert M. Waterhouse, Greg Donahue, Martin Helmkampf, Christopher D. Smith, Monica Munoz-Torres, Brian J. Parker, Jürgen Gadau, Sanne Nygaard, Laurent Keller, Julien Roux, Christine G. Elsik, Jiayu Wen, Lothar Wissler, Neil D. Tsutsui, Jacobus J. Boomsma, Brendan G. Hunt, Eran Elhaik, Cameron R. Currie, Danny Reinberg, Evgenia V. Kriventseva, Justin T. Reese, Daniel F. Simola, Garret Suen, Lumi Viljakainen, Christopher P. Childers, Alan Rawls, Yannick Wurm, Darren E. Hagen, Shelley L. Berger, Jürgen Liebig, Karl M. Glastad, Elizabeth Cash, Michael A. D. Goodisman, Evgeny M. Zdobnov, Dan Graur, Erich Bornberg-Bauer, Eyal Privman
Publikováno v:
Genome Research
Genome Research, Vol. 23, No 8 (2013) pp. 1235-47
Genome Research, vol. 23, no. 8, pp. 1235-1247
Genome research
Genome Research, Vol. 23, No 8 (2013) pp. 1235-47
Genome Research, vol. 23, no. 8, pp. 1235-1247
Genome research
Genomes of eusocial insects code for dramatic examples of phenotypic plasticity and social organization. We compared the genomes of seven ants, the honeybee, and various solitary insects to examine whether eusocial lineages share distinct features of