Zobrazeno 1 - 10
of 128
pro vyhledávání: '"Michael Snyder"'
Autor:
Alexander F. Kern, Roy Moh Lik Ang, Hunter B. Fraser, Neil M. Khosla, Michael Snyder, Grace Xiaolu Yang
Publikováno v:
BMC Ecology and Evolution, Vol 21, Iss 1, Pp 1-13 (2021)
BMC Ecology and Evolution
BMC Ecology and Evolution
Background Natural selection can act on multiple genes in the same pathway, leading to polygenic adaptation. For example, adaptive changes were found to down-regulate six genes involved in ergosterol biosynthesis—an essential pathway targeted by ma
Publikováno v:
PROTEOMICS. 16:465-476
Arginine methylation on nonhistone proteins is associated with a number of cellular processes including RNA splicing, protein localization, and the formation of protein complexes. In this manuscript, Saccharomyces cerevisiae proteome arrays carrying
Autor:
Michael Snyder, Mark Kaganovich
Publikováno v:
Journal of Proteome Research. 11:261-268
Gene duplication is a significant source of novel genes and the dynamics of gene duplicate retention vs loss are poorly understood, particularly in terms of the functional and regulatory specialization of their gene products. We compiled a comprehens
Autor:
Rui Chen, Michael Snyder
Publikováno v:
Journal of Proteomics
Our understanding of biological processes as well as human diseases has improved greatly thanks to studies on model organisms such as yeast. The power of scientific approaches with yeast lies in its relatively simple genome, its facile classical and
Autor:
Michael Snyder, Zarmik Moqtaderi, James T. Kadonaga, Barbara P. Rattner, Ghia Euskirchen, X. Shirley Liu, Kevin Struhl, Yong Zhang
Publikováno v:
Nature Structural & Molecular Biology. 17:920-923
Evidence against a genomic code for nucleosome positioning Reply to “Nucleosome sequence preferences influence in vivo nucleosome organization”
Autor:
Séverine Bontron, James R. Broach, Elisabetta Cameroni, Malika Jaquenoud, Nicolas Talarek, Geeta Devgan, Soyeon I. Lippman, Michael Snyder, Xuan Luo, Claudio De Virgilio
Publikováno v:
Molecular Cell. 38:345-355
Summary Eukaryotic cell proliferation is controlled by growth factors and essential nutrients, in the absence of which cells may enter into a quiescent (G 0 ) state. In yeast, nitrogen and/or carbon limitation causes downregulation of the conserved T
Publikováno v:
Nature
Variation in transcriptional regulation is thought to be a major cause of phenotypic diversity. Although widespread differences in gene expression among individuals of a species have been observed, studies to examine the variability of transcription
Autor:
Yong Zhang, Michael Snyder, Barbara P. Rattner, Kevin Struhl, James T. Kadonaga, X. Shirley Liu, Zarmik Moqtaderi, Ghia Euskirchen
Publikováno v:
Nature structural & molecular biology
Nature structural & molecular biology, vol 16, iss 8
Zhang, Y; Moqtaderi, Z; Rattner, BP; Euskirchen, G; Snyder, M; Kadonaga, JT; et al.(2009). Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nature Structural and Molecular Biology, 16(8), 847-852. doi: 10.1038/nsmb.1636. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/7rz2j814
Nature structural & molecular biology, vol 16, iss 8
Zhang, Y; Moqtaderi, Z; Rattner, BP; Euskirchen, G; Snyder, M; Kadonaga, JT; et al.(2009). Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nature Structural and Molecular Biology, 16(8), 847-852. doi: 10.1038/nsmb.1636. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/7rz2j814
We assess the role of intrinsic histone-DNA interactions by mapping nucleosomes assembled in vitro on genomic DNA. Nucleosomes strongly prefer yeast DNA over Escherichia coli DNA, indicating that the yeast genome evolved to favor nucleosome formation
Autor:
Christopher Hart, Li Ni, Michael Snyder, Mark Gerstein, Daniel M. Gelperin, Lara Umansky, Can Bruce, Justine A. Leigh-Bell
Publikováno v:
Genes & Development. 23:1351-1363
Complex biological processes are often regulated, at least in part, by the binding of transcription factors to their targets. Recently, considerable effort has been made to analyze the binding of relevant factors to the suite of targets they regulate
Autor:
Xiaofeng Xin, Julie M. Sahalie, Haiyuan Yu, Christophe Simon, David E. Hill, Nicolas Simonis, Amélie Dricot, Marc Vidal, Michael Snyder, Juyong Park, Michael E. Cusick, Irma Lemmens, Jean François Rual, Pascal Braun, Frederick P. Roth, Changyu Fan, Stanley Tam, Troy Moore, Leah Tardivo, Nenad Svrzikapa, Albert-László Barabási, Ryan R. Murray, Tong Hao, Adriana Motyl, Tomoko Hirozane-Kishikawa, Anne-Sophie De Smet, Alexei Vazquez, Kavitha Venkatesan, Muhammed A. Yildirim, Michael E. Hudson, Jan Tavernier, Nan Li, Charles Boone, Fana Gebreab
Publikováno v:
Science, 322 (5898
Current yeast interactome network maps contain several hundred molecular complexes with limited and somewhat controversial representation of direct binary interactions. We carried out a comparative quality assessment of current yeast interactome data