Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Anup Mahurkar"'
Autor:
Julie C. Dunning Hotopp, Katie R. Bradwell, Lisa Sadzewicz, John S. Mattick, David A. Rasko, Luke J. Tallon, Anup Mahurkar, Claire M. Fraser, Matthew Chung, Amol C. Shetty, Ricky S. Adkins
Publikováno v:
mSystems
mSystems, Vol 6, Iss 1 (2021)
mSystems, Vol 6, Iss 1 (2021)
Most currently available quantification tools for transcriptomics analyses have been designed for human data sets, in which full-length transcript sequences, including the untranslated regions, are well annotated. In most prokaryotic systems, full-le
Autor:
Claire M. Fraser, Anup Mahurkar, Vincent M. Bruno, Julie C. Dunning Hotopp, Scott G. Filler, David A. Rasko, Carrie McCracken, Amol C. Shetty, Matthew Chung, John S. Mattick
Publikováno v:
Microbial genomics, vol 6, iss 1
Microbial Genomics
Microbial Genomics
As sequencing read length has increased, researchers have quickly adopted longer reads for their experiments. Here, we examine 14 pathogen or host-pathogen differential gene expression data sets to assess whether using longer reads is warranted. A va
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::455996df337eeab80dff51a506cb7f8a
https://escholarship.org/uc/item/9v89v9bs
https://escholarship.org/uc/item/9v89v9bs
Autor:
Laura Teigen, Lisa Sadzewicz, Michelle L. Michalski, Jeremy M. Foster, Matthew Chung, Julie C. Dunning Hotopp, Dustin Olley, Luke J. Tallon, Robin E. Bromley, Anup Mahurkar, Silvia Libro, Nikhil Kumar
Publikováno v:
mSystems, Vol 4, Iss 6 (2019)
mSystems, Vol 4, Iss 6, p e00596-19 (2019)
mSystems
mSystems, Vol 4, Iss 6, p e00596-19 (2019)
mSystems
The current treatment regimen for lymphatic filariasis is mostly microfilaricidal. In an effort to identify new drug candidates for lymphatic filariasis, we conducted a three-way transcriptomics/systems biology study of one of the causative agents of
Autor:
Mari A. Griffioen, Amol C. Shetty, Shijun Zhu, Anup Mahurkar, Hyungsuk Kim, Heather Huot-Creasy, Carrie McCracken, Cameron B Lassiter, Debra E. Lyon, Cynthia L. Renn, Wendy A. Henderson, Leorey N. Saligan, Angela Starkweather, Colleen Jackson-Cook, Luana Colloca, Susan G. Dorsey, Jessica Gill
Publikováno v:
PLoS ONE, Vol 14, Iss 5, p e0216539 (2019)
The mechanisms underlying the transition from acute to chronic pain remain unclear. Here, we sought to characterize the transcriptome associated with chronic low back pain as well as the transcriptome of the transition from acute to chronic low back
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffcae82d91ea2a1409721ab75dc9af52
https://europepmc.org/articles/PMC6522025/
https://europepmc.org/articles/PMC6522025/
Autor:
Anup Mahurkar, Theresa K Hodges, Barbara J. Smith, Li Pan, Bishal Tandukar, Ferenc Livak, Sandeep S. Joshi, Thomas J. Hornyak, Jennifer M. Huang
Publikováno v:
PLoS genetics. 15(4)
Melanocyte stem cells (McSCs) are the undifferentiated melanocytic cells of the mammalian hair follicle (HF) responsible for recurrent generation of a large number of differentiated melanocytes during each HF cycle. HF McSCs reside in both the CD34+
Autor:
Joana C. Silva, David A. Rasko, Kelly M. Robinson, Ricky S. Adkins, Lisa Sadzewicz, Aziah S. Hawkins, Anup Mahurkar, Sushma Nagaraj, Julie C. Dunning Hotopp, Amol C. Shetty, Claire M. Fraser, Luke J. Tallon, Ivette Santana-Cruz
Publikováno v:
Microbial Genomics
doi: 10.1099/mgen.0.000122.001. As sequencing technologies have evolved, the tools to analyze these sequences have made similar advances. However, for multi-species samples, we observed important and adverse differences in alignment specificity and c
Autor:
Bing Ma, Jacques Ravel, Irina Andreyeva, Anne-Maria Fiorino, Patricia L. Hibberd, Arthur Brady, Anup Mahurkar, Emiley A. Eloe-Fadrosh, Miriam Haverkamp, Jonathan Crabtree, Claire M. Fraser, Elliott F. Drabek, Christine Botelho
Publikováno v:
mBio
mBio, Vol 6, Iss 2 (2015)
mBio, Vol 6, Iss 2 (2015)
A mechanistic understanding of the purported health benefits conferred by consumption of probiotic bacteria has been limited by our knowledge of the resident gut microbiota and its interaction with the host. Here, we detail the impact of a single-org
Autor:
Weizhong Chang, Todd Creasy, Dmitry I. Nurminsky, Amol C. Shetty, Anup Mahurkar, Maria Nurminskaya, Beatrice Milon, Yezhou Sun
Publikováno v:
BMC Genomics
Background Chromatin compactness has been considered a major determinant of gene activity and has been associated with specific chromatin modifications in studies on a few individual genetic loci. At the same time, genome-wide patterns of open and cl
Autor:
Patrik M. Bavoil, Sandy Ott, Naomi Sengamalay, Marcus C. Chibucos, Anup Mahurkar, Michael S. Humphrys, Huizhong Shou, Yezhou Sun, Elliott F. Drabek, Umar Farooq, Todd Creasy, Claire M. Fraser, Amol C. Shetty, Garry S. A. Myers
Publikováno v:
PLoS ONE
PLoS ONE, Vol 8, Iss 12, p e80597 (2013)
PLoS ONE, Vol 8, Iss 12, p e80597 (2013)
We developed an RNA-Seq-based method to simultaneously capture prokaryotic and eukaryotic expression profiles of cells infected with intracellular bacteria. As proof of principle, this method was applied to Chlamydia trachomatis-infected epithelial c