Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Stephen H. Bryant"'
Autor:
David I. Hurwitz, Christopher J. Lanczycki, Noreen R. Gonzales, Stephen H. Bryant, Farideh Chitsaz, James S. Song, Marc Gwadz, Gabriele H. Marchler, Narmada Thanki, Lewis Y. Geer, Dachuan Zhang, Renata C. Geer, Fu Lu, Chanjuan Zheng, Roxanne A. Yamashita, Myra K. Derbyshire, Aron Marchler-Bauer, Shennan Lu
Publikováno v:
Nucleic Acids Research
CDD, the Conserved Domain Database, is part of NCBI’s Entrez query and retrieval system and is also accessible via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml. CDD provides annotation of protein sequences with the location of conserved doma
Autor:
Ratna R. Thangudu, Aron Marchler-Bauer, Jessica H. Fong, Dachuan Zhang, Anna R. Panchenko, Manoj Tyagi, Benjamin A. Shoemaker, Thomas Madej, Stephen H. Bryant
Publikováno v:
Nucleic Acids Research
We have recently developed the Inferred Biomolecular Interaction Server (IBIS) and database, which reports, predicts and integrates different types of interaction partners and locations of binding sites in proteins based on the analysis of homologous
Autor:
Fu-Ping Lu, Carol DeWeese-Scott, John B. Anderson, James S. Song, Christopher J. Lanczycki, Zhaoxi Ke, Farideh Chitsaz, John D. Jackson, Mikhail Mullokandov, Roxanne A. Yamashita, Aron Marchler-Bauer, Marina V. Omelchenko, Chanjuan Zheng, Naigong Zhang, Noreen R. Gonzales, Marc Gwadz, Cynthia L. Robertson, Stephen H. Bryant, Gabriele H. Marchler, Jessica H. Fong, David I. Hurwitz, Lewis Y. Geer, Narmada Thanki, Renata C. Geer, Dachuan Zhang, Myra K. Derbyshire, Shennan Lu
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints. CDD includes manually curated domain models that make
Autor:
Stephen H. Bryant, Anna R. Panchenko
Publikováno v:
Protein Science. 11:361-370
Sequence comparison methods based on position-specific score matrices (PSSMs) have proven a useful tool for recognition of the divergent members of a protein family and for annotation of functional sites. Here we investigate one of the factors that a
Autor:
Farideh Chitsaz, Mikhail Mullokandov, Stephen H. Bryant, Siqian He, Jessica H. Fong, John B. Anderson, Fu-er Lu, Asba Tasneem, Myra K. Derbyshire, David I. Hurwitz, Renata C. Geer, Roxanne A. Yamashita, Carol DeWeese-Scott, James S. Song, Christopher J. Lanczycki, Zhaoxi Ke, Cynthia A. Liebert, Shennan Lu, Chunlei Liu, Dachuan Zhang, Noreen R. Gonzales, Naigong Zhang, Narmada Thanki, Lewis Y. Geer, John D. Jackson, Gabriele H. Marchler, Aron Marchler-Bauer, Marc Gwadz
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. The collection can be accessed at http://www.ncbi.nlm.nih.gov
Autor:
James S. Song, Gabriele H. Marchler, Carol DeWeese-Scott, Jodie J. Yin, Dmitri M. Krylov, John B. Anderson, Myra K. Derbyshire, Narmada Thanki, Aron Marchler-Bauer, Christopher J. Lanczycki, Zhaoxi Ke, Mikhail Mullokandov, Roxanne A. Yamashita, Chunlei Liu, John D. Jackson, Cynthia A. Liebert, Siqian He, Noreen R. Gonzales, Shennan Lu, Marc Gwadz, Fu Lu, Stephen H. Bryant, Luning Hao, David I. Hurwitz, Dachuan Zhang
Publikováno v:
Nucleic Acids Research
The conserved domain database (CDD) is part of NCBI's Entrez database system and serves as a primary resource for the annotation of conserved domain footprints on protein sequences in Entrez. Entrez's global query interface can be accessed at http://
Autor:
Cynthia A. Liebert, David I. Hurwitz, Stephen H. Bryant, Gabriele H. Marchler, Paul A. Thiessen, Vahan Simonyan, James S. Song, Dachuan Zhang, Jodie J. Yin, John B. Anderson, Benjamin A. Shoemaker, John D. Jackson, Lewis Y. Geer, Carol DeWeese-Scott, Mikhail Mullokandov, Siqian He, Roxanne A. Yamashita, Christopher J. Lanczycki, Zhaoxi Ke, Chunlei Liu, Fu Lu, Aron Marchler-Bauer, Marc Gwadz, Praveen F. Cherukuri
Publikováno v:
Nucleic Acids Research
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and PubMed®, and can be accessed at http://www.ncbi.nlm.nih.g
Autor:
Aron Marchler-Bauer, Stephen H. Bryant
Publikováno v:
Nucleic Acids Research. 32:W327-W331
We describe the Conserved Domain Search service (CD-Search), a web-based tool for the detection of structural and functional domains in protein sequences. CD-Search uses BLAST(R) heuristics to provide a fast, interactive service, and searches a compr
Autor:
Stephen H. Bryant, Manoj Tyagi, Benjamin A. Shoemaker, Ratna R. Thangudu, Thomas Madej, Anna R. Panchenko
Publikováno v:
BMC Bioinformatics, Vol 11, Iss 1, p 365 (2010)
BMC Bioinformatics
BMC Bioinformatics
Background The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapidly increasing structural data, it is essential to improve the tools tha
Autor:
Alejandro A. Schäffer, Stephen H. Bryant, Anna R. Panchenko, Paul A. Thiessen, Stephen F. Altschul, Maricel G. Kann
Publikováno v:
Bioinformatics (Oxford, England). 21(8)
Motivation: With the continuing rapid growth of protein sequence data, protein sequence comparison methods have become the most widely used tools of bioinformatics. Among these methods are those that use position-specific scoring matrices (PSSMs) to