Zobrazeno 1 - 10
of 46
pro vyhledávání: '"Brian P. Hedlund"'
Autor:
Marike Palmer, Jonathan K. Covington, En-Min Zhou, Scott C. Thomas, Neeli Habib, Cale O. Seymour, Dengxun Lai, Juliet Johnston, Ameena Hashimi, Jian-Yu Jiao, Alise R. Muok, Lan Liu, Wen-Dong Xian, Xiao-Yang Zhi, Meng-Meng Li, Leslie P. Silva, Benjamin P. Bowen, Katherine Louie, Ariane Briegel, Jennifer Pett-Ridge, Peter K. Weber, Elitza I. Tocheva, Tanja Woyke, Trent R. Northen, Xavier Mayali, Wen-Jun Li, Brian P. Hedlund
Publikováno v:
The ISME journal, vol 17, iss 7
Although the phylum Chloroflexota is ubiquitous, its biology and evolution are poorly understood due to limited cultivability. Here, we isolated two motile, thermophilic bacteria from hot spring sediments belonging to the genus Tepidiforma and class
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b879e7b0ccda26277e137bfaefcd69ab
https://escholarship.org/uc/item/133392jw
https://escholarship.org/uc/item/133392jw
Publikováno v:
Proceedings of the National Academy of Sciences. 119
Archaeal membrane lipids are widely used for paleotemperature reconstructions, yet these molecular fossils also bear rich information about ecology and evolution of marine ammonia-oxidizing archaea (AOA). Here we identified thermal and nonthermal beh
Autor:
Tomeu Viver, Roth E. Conrad, Marianna Lucio, Mourad Harir, Mercedes Urdiain, Juan F. Gago, Ana Suárez-Suárez, Esteban Bustos-Caparros, Rodrigo Sanchez-Martinez, Eva Mayol, Federico Fassetta, Jinfeng Pang, Ionuț Mădălin Gridan, Stephanus Venter, Fernando Santos, Bonnie Baxter, María E. Llames, Adorján Cristea, Horia L. Banciu, Brian P. Hedlund, Matthew B. Stott, Peter Kämpfer, Rudolf Amann, Philippe Schmitt-Kopplin, Konstantinos T. Konstantinidis, Ramon Rossello-Mora
Publikováno v:
Systematic and Applied Microbiology. 46:126416
Current -omics methods allow the collection of a large amount of information that helps in describing the microbial diversity in nature. Here, and as a result of a culturomic approach that rendered the collection of thousands of isolates from 5 diffe
Autor:
Yuan-Guo Xie, Zhen-Hao Luo, Bao-Zhu Fang, Jian-Yu Jiao, Qi-Jun Xie, Xing-Ru Cao, Yan-Ni Qu, Yan-Lin Qi, Yang-Zhi Rao, Yu-Xian Li, Yong-Hong Liu, Andrew Li, Cale Seymour, Marike Palmer, Brian P. Hedlund, Wen-Jun Li, Zheng-Shuang Hua
Publikováno v:
Microbiome. 10(1)
Background Candidatus Nanohaloarchaeota, an archaeal phylum within the DPANN superphylum, is characterized by limited metabolic capabilities and limited phylogenetic diversity and until recently has been considered to exclusively inhabit hypersaline
Autor:
Brayon J. Fremin, Ami S. Bhatt, Nikos C. Kyrpides, Aditi Sengupta, Alexander Sczyrba, Aline Maria da Silva, Alison Buchan, Amelie Gaudin, Andreas Brune, Ann M. Hirsch, Anthony Neumann, Ashley Shade, Axel Visel, Barbara Campbell, Brett Baker, Brian P. Hedlund, Byron C. Crump, Cameron Currie, Charlene Kelly, Chris Craft, Christina Hazard, Christopher Francis, Christopher W. Schadt, Colin Averill, Courtney Mobilian, Dan Buckley, Dana Hunt, Daniel Noguera, David Beck, David L. Valentine, David Walsh, Dawn Sumner, Despoina Lymperopoulou, Devaki Bhaya, Donald A. Bryant, Elise Morrison, Eoin Brodie, Erica Young, Erik Lilleskov, Eva Högfors-Rönnholm, Feng Chen, Frank Stewart, Graeme W. Nicol, Hanno Teeling, Harry R. Beller, Hebe Dionisi, Hui-Ling Liao, J. Michael Beman, James Stegen, James Tiedje, Janet Jansson, Jean VanderGheynst, Jeanette Norton, Jeff Dangl, Jeffrey Blanchard, Jennifer Bowen, Jennifer Macalady, Jennifer Pett-Ridge, Jeremy Rich, Jérôme P. Payet, John D. Gladden, Jonathan D. Raff, Jonathan L. Klassen, Jonathan Tarn, Josh Neufeld, Kelly Gravuer, Kirsten Hofmockel, Ko-Hsuan Chen, Konstantinos Konstantinidis, Kristen M. DeAngelis, Laila P. Partida-Martinez, Laura Meredith, Ludmila Chistoserdova, Mary Ann Moran, Matthew Scarborough, Matthew Schrenk, Matthew Sullivan, Maude David, Michelle A. O'Malley, Monica Medina, Mussie Habteselassie, Nicholas D. Ward, Nicole Pietrasiak, Olivia U. Mason, Patrick O. Sorensen, Paulina Estrada de los Santos, Petr Baldrian, R. Michael McKay, Rachel Simister, Ramunas Stepanauskas, Rebecca Neumann, Rex Malmstrom, Ricardo Cavicchioli, Robert Kelly, Roland Hatzenpichler, Roman Stocker, Rose Ann Cattolico, Ryan Ziels, Rytas Vilgalys, Sara Blumer-Schuette, Sean Crowe, Simon Roux, Steven Hallam, Steven Lindow, Susan H. Brawley, Susannah Tringe, Tanja Woyke, Thea Whitman, Thomas Bianchi, Thomas Mock, Timothy Donohue, Timothy Y. James, Udaya C. Kalluri, Ulas Karaoz, Vincent Denef, Wen-Tso Liu, William Whitman, Yang Ouyang
Publikováno v:
Cell Rep
Small genes (40,000 small-gene families in ~2.3 million phage genome contigs. We find that small genes in phage genomes are approximately 3-fold more prevalent than in host prokaryotic genomes. Our approach enriches for small genes that are translate
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7811364742ad68dd9e3a080fb28629f4
https://doi.org/10.1016/j.celrep.2022.110984
https://doi.org/10.1016/j.celrep.2022.110984
Publikováno v:
International Journal of Systematic and Evolutionary Microbiology. 70:2937-2948
In prokaryotic taxonomy, a set of criteria is commonly used to delineate species. These criteria are generally based on cohesion at the phylogenetic, phenotypic and genomic levels. One such criterion shown to have promise in the genomic era is averag
Autor:
Tanja Woyke, Yasuo Yoshikuni, Brian P. Hedlund, Devin F. R. Doud, Markus de Raad, Frederik Schulz, Samuel Deutsch, Robert M. Bowers, Natalia Ivanova, Brian G. Fox, Steven W. Singer, Kirk A. Vander Meulen, Evan Glasgow, Angela Tarver, Trent R. Northen, Kai Deng
Publikováno v:
The ISME Journal
The ISME journal, vol 14, iss 3
The ISME journal, vol 14, iss 3
Assigning a functional role to a microorganism has historically relied on cultivation of isolates or detection of environmental genome-based biomarkers using a posteriori knowledge of function. However, the emerging field of function-driven single-ce
Autor:
En-Min Zhou, Scott C. Thomas, Jeremy A. Dodsworth, Arinola L. Adegboruwa, Shrikant S. Bhute, Chrisabelle C. Mefferd, Wen-Dong Xian, Amanda J Bengtson, Wen-Jun Li, Lan Liu, Brian P. Hedlund, Senthil K. Murugapiran
Publikováno v:
Extremophiles. 24:71-80
Thermus species are thermophilic heterotrophs, with most capable of using a variety of organic and inorganic electron donors for respiration. Here, a combined cultivation-independent and -dependent approach was used to explore the diversity of Thermu
Autor:
Steffen Buessecker, Marike Palmer, Dengxun Lai, Joshua Dimapilis, Xavier Mayali, Damon Mosier, Jian-Yu Jiao, Daniel R. Colman, Lisa M. Keller, Emily St. John, Michelle Miranda, Cristina Gonzalez, Lizett Gonzalez, Christian Sam, Christopher Villa, Madeline Zhuo, Nicholas Bodman, Fernando Robles, Eric S. Boyd, Alysia D. Cox, Brian St. Clair, Zheng-Shuang Hua, Wen-Jun Li, Anna-Louise Reysenbach, Matthew B. Stott, Peter K. Weber, Jennifer Pett-Ridge, Anne E. Dekas, Brian P. Hedlund, Jeremy A. Dodsworth
Publikováno v:
Nature communications. 13(1)
Trace metals have been an important ingredient for life throughout Earth’s history. Here, we describe the genome-guided cultivation of a member of the elusive archaeal lineage Caldarchaeales (syn. Aigarchaeota), Wolframiiraptor gerlachensis, and it
Autor:
William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Philip Hugenholtz, Konstantinos T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Alexander J. Probst, Anna-Louise Reysenbach, Luis M. Rodriguez-R, Ramon Rossello-Mora, Iain Sutcliffe, Stephanus N. Venter
Publikováno v:
Systematic and Applied Microbiology. 45:126305
Over the last fifteen years, genomics has become fully integrated into prokaryotic systematics. The genomes of most type strains have been sequenced, genome sequence similarity is widely used for delineation of species, and phylogenomic methods are c