Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Mathangi Thiagarajan"'
Autor:
Raymond Powell, Phuong-My Do, Mark A. Jensen, Tanja Davidsen, Michael S. Fitzsimons, Karl Rademacher, Daniel P. Miller, Ariz Zubair, Christina K. Yung, Francisco M. Ortuño, Stuti Agrawal, Allison Heath, James C. Angelakos, Kim Cullion, Shenglai Li, Yajing Tang, Janice Lodato, Martin L. Ferguson, Gajanan Ganji, Liming Yang, Kang Han, Sid Joshi, Jesús Pedrosa, Lincoln Stein, Zhining Wang, Jeffrey A. Mazzone, Plamen Martinov, Bessie Rogel, Alex Wilmer, Yuanheng Zhao, Vincent Ferretti, Mathangi Thiagarajan, Zhenyu Zhang, Francois Gerthoffert, Koji Miyauchi, Christian Dompierre, Jonathan Spring, Kaman Wu, Laxmi Lolla, Kyle M. Hernandez, Heather D. Troyer, Ian J. Miller, William P. Wysocki, Joseph Sislow, Linda Xiang, Mark W. Murphy, Joshua S. Miller, Jeffrey Burt, James J. Porter, Shane Wilson, Maksim An, Robert L. Grossman, Sean Sullivan, Bilal Baqar, Renuka Arya, Joseph Tadashi Yamada, Daniela S. Gerhard, Miyuki Fukuma, Maxim Y. Popov, Rosita Bajari, Thomas Nullet, Tara M. Lichtenberg, Jeremiah Savage, Tzintzuni Garcia, Fauzi Gomez, Samantha Rich, Louis M. Staudt, Bedford L. West, Ajinkya Kadam, Kyle A. Schmitt, Phuong L. Pham, Richard Jackson, Michael Ford, Sharon Gaheen, Himanso Sahni, Rowland O. Ogwara, Chang Wang, Victoria E. Kraft, Aishmit Khurana, Sameera S. George, Fay Chu, Colin P. Reid, Christine Yu, Jean C. Zenklusen, Ann Catton, Biju Issac, Justin H. B. Barnowski, Kyle M. J. Kim, Brandon F. Chan, Trevar J. Simmons, Junjun Zhang
Publikováno v:
Nature Genetics. 53:257-262
The National Cancer Institute (NCI) Genomic Data Commons (GDC) contains more than 2.9 petabytes of genomic and associated clinical data from more than 60 NCI-funded and other contributed cancer genomics research projects. The GDC consists of five app
Autor:
Yuxing Liao, Meghan C. Burke, Donghui Tan, Xiaoyu Song, Lauren C. Tang, Elizabeth R. Duffy, Shayan C. Avanessian, Daniel Cui Zhou, Maureen Dyer, Sara R. Savage, Jennifer M. Eschbacher, Shaleigh Smith, Alex Webster, Alicia Francis, Kelly V. Ruggles, Christopher R. Kinsinger, Shirley Tsang, Melissa Borucki, Nancy Roche, Pei Wang, Qing Kay Li, David Chesla, Ronald Matteotti, Zeynep H. Gümüş, Kai Li, Kei Suzuki, Thomas L. Bauer, Lori J. Sokoll, John McGee, Marcin J. Domagalski, Ki Sung Um, Tara Hiltke, Hai-Quan Chen, Hongwei Liu, Eric E. Schadt, Antonio Colaprico, Alyssa Charamut, Lijun Chen, Emily Kawaler, Ramani B. Kothadia, Mehdi Mesri, Jiayi Ji, Simina M. Boca, Myvizhi Esai Selvan, Emily S. Boja, Xi Chen, Shuang Cai, Kim Elburn, Samuel H. Payne, George D. Wilson, Peter B. McGarvey, Chelsea J. Newton, Felipe da Veiga Leprevost, Uma Velvulou, Tara Skelly, Corbin D. Jones, Michael J. Birrer, Steven A. Carr, Erik J. Bergstrom, Jeffrey R. Whiteaker, Michael H.A. Roehrl, Gad Getz, Tanya Krubit, Zhen Zhang, Yan Shi, Lili Blumenberg, Melanie A. MacMullan, Song Cao, Zhiao Shi, Weiping Ma, Chet Birger, Karl R. Clauser, Runyu Hong, Shankha Satpathy, Andrii Karnuta, Boris Reva, Barbara Hindenach, Matthew J. Ellis, Amanda G. Paulovich, Michael C. Wendl, Bing Zhang, Marina A. Gritsenko, Matthew A. Wyczalkowski, Stacey Gabriel, Michael A. Gillette, Jacob J. Day, Maciej Wiznerowicz, Stephen E. Stein, Ewa P. Malc, Robert J. Welsh, Sunita Shankar, Brian J. Druker, Li Ding, Lijun Yao, David J. Clark, Małgorzata Wojtyś, Dmitry Rykunov, Eugene S. Fedorov, Linda Hannick, Andrew K. Godwin, Sailaja Mareedu, Pushpa Hariharan, Mary Beth Beasley, Stephanie De Young, Arul M. Chinnaiyan, Robert Zelt, Mathangi Thiagarajan, Munziba Khan, Suhas Vasaikar, Tao Liu, Karin D. Rodland, Katherine A. Hoadley, Wen-Wei Liang, Ana I. Robles, Dana R. Valley, Sanford P. Markey, Mikhail Krotevich, David I. Heiman, Piotr A. Mieczkowski, Galen Hostetter, Liqun Qi, Yige Wu, Hui Zhang, Liang-Bo Wang, Nathan Edwards, Ramaswamy Govindan, Yifat Geffen, Seema Chugh, Alexey I. Nesvizhskii, Karen A. Ketchum, Pankaj Vats, Matthew E. Monroe, Marcin Cieslik, Yingwei Hu, Karsten Krug, Yosef E. Maruvka, Yize Li, Ratna R. Thangudu, William W. Maggio, Sandra Cottingham, Saravana M. Dhanasekaran, Wenke Liu, Hua Sun, Sonya Carter, Volodymyr Sovenko, M. Harry Kane, Annette Marrero-Oliveras, Barbara Pruetz, Amy M. Perou, Gilbert S. Omenn, Azra Krek, Olga Potapova, Michael S. Noble, Daniel W. Chan, Seungyeul Yoo, Eric J. Burks, Bo Wen, William Bocik, Michael Vernon, Henry Rodriguez, James Suh, Scott D. Jewell, MacIntosh Cornwell, Richard D. Smith, Chandan Kumar-Sinha, Halina M. Krzystek, Daniel C. Rohrer, Tatiana Omelchenko, D. R. Mani, Houston Culpepper, Vladislav A. Petyuk, Meng-Hong Sun, Michelle Chaikin, David Fenyö, Rahul Mannan, Bartosz Kubisa, Rohit Mehra, Rajwanth R. Veluswamy, Umut Ozbek, Michael Schnaubelt, Francesca Petralia, Elena V. Ponomareva, Rashna Madan, Pamela Grady, Karna Robinson, Negin Vatanian
Publikováno v:
Cell
To explore the biology of lung adenocarcinoma (LUAD) and identify new therapeutic opportunities, we performed comprehensive proteogenomic characterization of 110 tumors and 101 matched normal adjacent tissues (NATs) incorporating genomics, epigenomic
Autor:
Emily S. Boja, Ratna R. Thangudu, Karl R. Clauser, Li Ding, Steven J. Skates, David L. Tabb, Tao Liu, Christopher R. Kinsinger, Yue Wang, Vladislav A. Petyuk, Andrew N. Hoofnagle, Matthew C. Chambers, Ie Ming Shih, Kelly V. Ruggles, Gordon Whiteley, Michael Snyder, Matthew J. Ellis, Stephen E. Stein, Mauricio Oberti, Karen A. Ketchum, Melissa Borucki, Samuel H. Payne, Eric Kuhn, Sara R. Savage, Zhiao Shi, Zhen Zhang, Yongchao Dou, David Fenyö, Bing Zhang, Melinda E. Sanders, Matthew E. Monroe, Shuang Cai, Philip Mertins, Peter B. McGarvey, Mathangi Thiagarajan, R. Reid Townsend, Daniel W. Chan, Robert Rivers, Nathan Edwards, Hui Zhang, Tara Hiltke, Bo Wen, Jasmin H. Bavarva, Steven A. Carr, Richard D. Smith, Mark A. Watson, Xiaojing Wang, Mehdi Mesri, Yi-Ting Wang, Douglas A. Levine, Linda Hannick, Rui Zhao, Suhas Vasaikar, Marina A. Gritsenko, Lisa J. Zimmerman, Forest M. White, Amanda G. Paulovich, Michael A. Gillette, Xian Chen, Henry Rodriguez, Ken S. Lau, Akhilesh Pandey, Robbert J.C. Slebos, Daniel C. Liebler, Jeffrey R. Whiteaker, Therese R. W. Clauss, Karin D. Rodland, Paul A. Rudnick, Subha Madhavan, Kimberly Elburn, Yun Zhang, Negin Vatanian, Osama A. Arshad, Sherri R. Davies, Jason E. McDermott, Qianxing Mo, Ronald J. Moore, David F. Ransohoff, D. R. Mani, Heng Zhu, Yingming Zhao, Chen Huang
Publikováno v:
Cell. 177:1035-1049.e19
We performed the first proteogenomic study on a prospectively collected colon cancer cohort. Comparative proteomic and phosphoproteomic analysis of paired tumor and normal adjacent tissues produced a catalog of colon cancer-associated proteins and ph
Autor:
Adam R. Wespiser, Don Gilbert, Vincent Croset, Joseph J. Gillespie, Renfu Shao, Timothy J. Kurtti, Julio Rozas, Hugh M. Robertson, Stephen C. Barker, Karen E. Nelson, Ketaki Bhide, Yoonseong Park, Brooke W. Bissinger, Patricia V. Pietrantonio, Joao H. F. Pedra, Janice P. Van Zee, Peter Arensburger, Hyeogsun Kwon, Timothy P. Driscoll, Daniel Lawson, Ryan C. Kennedy, Emma G. Lang, David Jiang, Jessica B. Hostetler, Jesús Vázquez, Zhijian Jake Tu, José de la Fuente, Bruce W. Birren, Juraj Koči, David R. Nelson, Catherine A. Hill, Brian P. Walenz, Frank Hauser, Cornelis J. P. Grimmelikhuijzen, Mathangi Thiagarajan, Andrew B. Nuss, Richard Benton, Linda Hannick, Kristin Lees, Stephen K. Wikel, Daniel R. Caffrey, Evgeny M. Zdobnov, Jason R. Miller, Elisabet Caler, Melissa J. Caimano, José M. C. Ribeiro, Jeffrey M. Grabowski, Elena Bonzón-Kulichenko, Monika Gulia-Nuss, Marta Tojo, Daniel E. Sonenshine, Joyce M. Sakamoto, Rushika Perera, Sergey Koren, R. Michael Roe, Nieves Ayllón, Qiandong Zeng, Jyothi Thimmapuram, Katherine M. Kocan, Jenica L. Abrudan, Gloria I. Giraldo-Calderón, Margarita Villar, David B. Sattelle, Alejandro Sánchez-Gracia, Francisca C. Almeida, Donghun Kim, Granger G. Sutton, Richard J. Kuhn, Maiara S. Severo, Sayed M.S. Khalil, Jiwei Zhu, Cristian Tornador, Shelby L. Bidwell, Vinita Joardar, Jose M. C. Tubio, Robert M. Waterhouse, Justin D. Radolf, Martin Hammond, Sarah Young, Steven D. Buckingham, Frank H. Collins, Yumin Qi, Ladislav Šimo, Maria F. Unger, Jason M. Meyer, Karyn Megy, Neal S. Silverman, Filipe G. Vieira, Martin Shumway, Jennifer R. Wortman, Claire M. Fraser, Yunlong Yang, Vishvanath Nene
Publikováno v:
Nature Communications, vol. 7, no. 10507, pp. 10507
Nature Communications, Vol. 7 (2016) P. 10507
Nature Communications
Nature Communications, Nature Publishing Group, 2016, 7, pp.1-13. ⟨10.1038/ncomms10507⟩
Nature Communications, Vol 7, Iss 1, Pp 1-13 (2016)
Nature Publishing Group
Repisalud
Instituto de Salud Carlos III (ISCIII)
Nature Communications (7), 1-13. (2016)
Gulia-Nuss, M, Nuss, A B, Meyer, J M, Sonenshine, D E, Roe, R M, Waterhouse, R M, Sattelle, D B, de la Fuente, J, Ribeiro, J M, Megy, K, Thimmapuram, J, Miller, J R, Walenz, B P, Koren, S, Hostetler, J B, Thiagarajan, M, Joardar, V S, Hannick, L I, Bidwell, S, Hammond, M P, Young, S, Zeng, Q, Abrudan, J L, Almeida, F C, Ayllón, N, Bhide, K, Bissinger, B W, Bonzon-Kulichenko, E, Buckingham, S D, Caffrey, D R, Caimano, M J, Croset, V, Driscoll, T, Gilbert, D, Gillespie, J J, Giraldo-Calderón, G I, Grabowski, J M, Jiang, D, Khalil, S M S, Kim, D, Kocan, K M, Koči, J, Kuhn, R J, Kurtti, T J, Lees, K, Lang, E G, Kennedy, R C, Kwon, H, Perera, R, Qi, Y, Radolf, J D, Sakamoto, J M, Sánchez-Gracia, A, Severo, M S, Silverman, N, Šimo, L, Tojo, M, Tornador, C, Van Zee, J P, Vázquez, J, Garrett Vieira, F J, Villar, M, Wespiser, A R, Yang, Y, Zhu, J, Arensburger, P, Pietrantonio, P V, Barker, S C, Shao, R, Zdobnov, E M, Hauser, F, Grimmelikhuijzen, C C, Park, Y, Rozas, J, Benton, R, Pedra, J H F, Nelson, D R, Unger, M F, Tubio, J M C, Tu, Z, Robertson, H M, Shumway, M, Sutton, G, Wortman, J R, Lawson, D, Wikel, S K, Nene, V M, Fraser, C M, Collins, F H, Birren, B, Nelson, K E, Caler, E & Hill, C A 2016, ' Genomic insights into the Ixodes scapularis tick vector of Lyme disease ', Nature Communications, vol. 7, 10507 . https://doi.org/10.1038/ncomms10507
Nature communications
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature Communications, Vol. 7 (2016) P. 10507
Nature Communications
Nature Communications, Nature Publishing Group, 2016, 7, pp.1-13. ⟨10.1038/ncomms10507⟩
Nature Communications, Vol 7, Iss 1, Pp 1-13 (2016)
Nature Publishing Group
Repisalud
Instituto de Salud Carlos III (ISCIII)
Nature Communications (7), 1-13. (2016)
Gulia-Nuss, M, Nuss, A B, Meyer, J M, Sonenshine, D E, Roe, R M, Waterhouse, R M, Sattelle, D B, de la Fuente, J, Ribeiro, J M, Megy, K, Thimmapuram, J, Miller, J R, Walenz, B P, Koren, S, Hostetler, J B, Thiagarajan, M, Joardar, V S, Hannick, L I, Bidwell, S, Hammond, M P, Young, S, Zeng, Q, Abrudan, J L, Almeida, F C, Ayllón, N, Bhide, K, Bissinger, B W, Bonzon-Kulichenko, E, Buckingham, S D, Caffrey, D R, Caimano, M J, Croset, V, Driscoll, T, Gilbert, D, Gillespie, J J, Giraldo-Calderón, G I, Grabowski, J M, Jiang, D, Khalil, S M S, Kim, D, Kocan, K M, Koči, J, Kuhn, R J, Kurtti, T J, Lees, K, Lang, E G, Kennedy, R C, Kwon, H, Perera, R, Qi, Y, Radolf, J D, Sakamoto, J M, Sánchez-Gracia, A, Severo, M S, Silverman, N, Šimo, L, Tojo, M, Tornador, C, Van Zee, J P, Vázquez, J, Garrett Vieira, F J, Villar, M, Wespiser, A R, Yang, Y, Zhu, J, Arensburger, P, Pietrantonio, P V, Barker, S C, Shao, R, Zdobnov, E M, Hauser, F, Grimmelikhuijzen, C C, Park, Y, Rozas, J, Benton, R, Pedra, J H F, Nelson, D R, Unger, M F, Tubio, J M C, Tu, Z, Robertson, H M, Shumway, M, Sutton, G, Wortman, J R, Lawson, D, Wikel, S K, Nene, V M, Fraser, C M, Collins, F H, Birren, B, Nelson, K E, Caler, E & Hill, C A 2016, ' Genomic insights into the Ixodes scapularis tick vector of Lyme disease ', Nature Communications, vol. 7, 10507 . https://doi.org/10.1038/ncomms10507
Nature communications
Digital.CSIC. Repositorio Institucional del CSIC
instname
Ticks transmit more pathogens to humans and animals than any other arthropod. We describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors pathogens that cause Lyme disease, human granulocytic anaplasmosis, babesiosis an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fd276fc495c70c6b4dacd5d9615c0d1b
https://serval.unil.ch/notice/serval:BIB_D4988D4D9151
https://serval.unil.ch/notice/serval:BIB_D4988D4D9151
Autor:
Anne E. Kwitek, Howard J. Jacob, Truong V. Luu, Hedieh Sajadi, Noah E. Letwin, Xianping Fu, Renae L. Malek, Gretta Borchardt, Norman H. Lee, Nirmal Bhagabati, Steven L. Salzberg, Bryan C. Frank, Hong Ying Wang, Lisa Cahill, Razvan Sultana, Kathleen Veratti, John Quackenbush, Mathangi Thiagarajan, Alexander I. Saeed, Joseph White, Tracey Currier, Eleanor A. Howe, Andrew S. Greene, Jennifer Tsai, Michael Hasinoff
Publikováno v:
Nature Genetics. 38:234-239
Cardiovascular disorders are influenced by genetic and environmental factors. The TIGR rodent expression web-based resource (TREX) contains over 2,200 microarray hybridizations, involving over 800 animals from 18 different rat strains. These strains
Autor:
R. Alexander Richter, Narin Celepli, Björn Brindefalk, Karolina Ininbergs, Aaron Tenney, Daniel Brami, Lisa Zeigler Allen, Robert Friedman, Andrey Tovchigrechko, Martin Ekman, Jonathan H. Badger, Erling Norrby, Jeff Hoffman, Johannes Asplund-Samuelsson, Christopher L. Dupont, Daniel Lundin, Birgitta Bergman, John P. McCrow, Douglas B. Rusch, Johannes B. Goll, Andrew E. Allen, Åke Hagström, J. Craig Venter, John Larsson, Johan A. A. Nylander, Mathangi Thiagarajan, Jarone Pinhassi, Anders F. Andersson, Andrew Lucas, Shibu Yooseph
Publikováno v:
PLoS ONE
PLoS ONE, Vol 9, Iss 2, p e89549 (2014)
PLoS ONE, Vol 9, Iss 2, p e89549 (2014)
Bacterial community composition and functional potential change subtly across gradients in the surface ocean. In contrast, while there are significant phylogenetic divergences between communities from freshwater and marine habitats, the underlying me
Autor:
Jacques Izard, Makedonka Mitreva, Bernard Henrissat, Brandi L. Cantarel, Owen White, Jeremy Zucker, Nicola Segata, Alyxandria M. Schubert, Patrick D. Schloss, Barbara A. Methé, Curtis Huttenhower, Beltran Rodriguez-Mueller, Sahar Abubucker, Dirk Gevers, Johannes B. Goll, Mathangi Thiagarajan, Scott T. Kelley
Publikováno v:
PLoS Computational Biology, Vol 8, Iss 6, p e1002358 (2012)
PLoS
PLoS Computational Biology
PLoS
PLoS Computational Biology
Microbial communities carry out the majority of the biochemical activity on the planet, and they play integral roles in processes including metabolism and immune homeostasis in the human microbiome. Shotgun sequencing of such communities' metagenomes
Autor:
Shibu Yooseph, Hernan Lorenzi, Shannon J. Williamson, Mathangi Thiagarajan, Andrey Tovchigrechko, J. Craig Venter, John P. McCrow, Douglas Fadrosh, Daniel Brami, Lisa Zeigler Allen
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e42047 (2012)
PLoS ONE
PLoS ONE
The characterization of global marine microbial taxonomic and functional diversity is a primary goal of the Global Ocean Sampling Expedition. As part of this study, 19 water samples were collected aboard the Sorcerer II sailing vessel from the southe
Autor:
Aaron P. Turkewitz, Nicola J. Patron, Roger Smith, Eileen P. Hamilton, Paolo Amedeo, Lei Sun, Hong-Hong Cai, Qinghu Ren, Nels C. Elde, Jonathan A. Eisen, Arthur L. Delcher, Eduardo Orias, Zasha Weinberg, Katarzyna Wilamowska, Che-Chia Tsao, Jyoti Garg, Martin Wu, Brian J. Haas, Jonathan H. Badger, Kristie M. Jones, Maryam Farzad, Rebecca A Barbeau, Kathleen M Karrer, Gerard Manning, Steven L. Salzberg, Ross F. Waller, David J. Asai, Sondra Williamson, Mathangi Thiagarajan, Christina del Toro, Yufeng Wang, William H. Majoros, Joseph Frankel, Kathleen E Collins, Luke J. Tallon, Nicholas A. Stover, Jane M. Carlton, Cynthia J. Krieger, Patrick J. Keeling, Suzanne R. Lee, Dongying Wu, Jennifer R. Wortman, Walter L. Ruzzo, Martin A. Gorovsky, Dorota Wloga, Joana C. Silva, Ronald E. Pearlman, Jacek Gaertig, Robert S. Coyne, Hilary F. Ryder, B. Andrew Stewart, J. Michael Cherry, David E. Wilkes
Publikováno v:
PLoS Biology
Eisen, Jonathan A; Coyne, Robert S; Wu, Martin; Wu, Dongying; Thiagarajan, Mathangi; Wortman, Jennifer R; et al.(2006). Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.. PLoS biology, 4(9), 286-286. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/30225213
PLoS Biology, Vol 4, Iss 9, p e286 (2006)
Eisen, Jonathan A; Coyne, Robert S; Wu, Martin; Wu, Dongying; Thiagarajan, Mathangi; Wortman, Jennifer R; et al.(2006). Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.. PLoS biology, 4(9), 286-286. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/30225213
PLoS Biology, Vol 4, Iss 9, p e286 (2006)
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct nuclei within a single cell. The germline-like micron
Autor:
Sahar Abubucker, Curtis Huttenhower, Johannes B. Goll, Barbara A. Methé, Shibu Yooseph, Mathangi Thiagarajan
Publikováno v:
PLoS ONE
PLoS ONE, Vol 7, Iss 6, p e29044 (2012)
PLoS ONE, Vol 7, Iss 6, p e29044 (2012)
As metagenomic studies continue to increase in their number, sequence volume and complexity, the scalability of biological analysis frameworks has become a rate-limiting factor to meaningful data interpretation. To address this issue, we have develop