Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Henrik Hasman"'
Autor:
Kuan Yao, Leif P. Andersen, Henrik Hasman, Marc W. Allard, Maria Hoffmann, Maria Sanchez, Anette M. Hammerum
Publikováno v:
Microbiology Resource Announcements. 7
In 2014, the first vancomycin-resistant (encoded by vanA ) Enterococcus faecium isolate belonging to sequence type 203 (ST203) and complex type 859 (CT859) was detected in Denmark. In 2016, 64% of the Danish clinical vanA E. faecium isolates belonged
Autor:
Ulrik Stenz Justesen, Henrik Hasman, Frank Hansen, Marc Stegger, Louise Roer, Kim Lee Ng, Anette M. Hammerum, Søren Overballe-Petersen, Leif P. Andersen
Publikováno v:
Genome Announcements. 6
Using Nanopore sequencing, we describe here the circular genome of an Escherichia coli sequence type 410 (ST410) strain with five closed plasmids. A large 111-kb incompatibility group F (IncF) plasmid harbored bla NDM-5 and 16 other resistance genes.
Publikováno v:
Thomsen, M C F, Hasman, H, Westh, H, Kaya, H & Lund, O 2017, ' RUCS : rapid identification of PCR primers for unique core sequences ', Bioinformatics, vol. 33, no. 24, pp. 3917-3921 . https://doi.org/10.1093/bioinformatics/btx526
Bioinformatics
Thomsen, M C F, Hasman, H, Westh, H, Kaya, H & Lund, O 2017, ' RUCS: Rapid identification of PCR primers for unique core sequences ', Bioinformatics, vol. 33, no. 24, pp. 3917-3921 . https://doi.org/10.1093/bioinformatics/btx526
BASE-Bielefeld Academic Search Engine
Bioinformatics
Thomsen, M C F, Hasman, H, Westh, H, Kaya, H & Lund, O 2017, ' RUCS: Rapid identification of PCR primers for unique core sequences ', Bioinformatics, vol. 33, no. 24, pp. 3917-3921 . https://doi.org/10.1093/bioinformatics/btx526
BASE-Bielefeld Academic Search Engine
Motivation Designing PCR primers to target a specific selection of whole genome sequenced strains can be a long, arduous and sometimes impractical task. Such tasks would benefit greatly from an automated tool to both identify unique targets, and to v
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c049c155735dbd79e8ef1ec1b124f295
https://curis.ku.dk/portal/da/publications/rucs(0aee890f-6410-4161-975d-15a07baadcdd).html
https://curis.ku.dk/portal/da/publications/rucs(0aee890f-6410-4161-975d-15a07baadcdd).html
Autor:
Louise Roer, Rene S. Hendriksen, Pimlapas Leekitcharoenphon, Oksana Lukjancenko, Rolf Sommer Kaas, Henrik Hasman, Frank M. Aarestrup, Jonathan Eisen
Publikováno v:
mSystems, Vol 1, Iss 3, p e00009-16 (2016)
BASE-Bielefeld Academic Search Engine
Roer, L, Hendriksen, R S, Leekitcharoenphon, P, Lukjancenko, O, Kaas, R S, Hasman, H & Aarestrup, F M 2016, ' Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? ', mSystems, vol. 1, no. 3, e00009-16 . https://doi.org/10.1128/mSystems.00009-16
mSystems
mSystems, Vol 1, Iss 3 (2016)
BASE-Bielefeld Academic Search Engine
Roer, L, Hendriksen, R S, Leekitcharoenphon, P, Lukjancenko, O, Kaas, R S, Hasman, H & Aarestrup, F M 2016, ' Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? ', mSystems, vol. 1, no. 3, e00009-16 . https://doi.org/10.1128/mSystems.00009-16
mSystems
mSystems, Vol 1, Iss 3 (2016)
The evolution of bacterial pathogens, their plasticity and ability to rapidly change and adapt to new surroundings are crucial for understanding the epidemiology and public health. With the application of genomics, it became clear that horizontal gen
Publikováno v:
Genome Announcements. 3
We announce here the draft genome sequences of Sanguibacteroides justesenii , gen. nov., sp. nov., strains OUH 308042 T (= DSM 28342 T = ATCC BAA-2681 T ) and OUH 334697 (= DSM 28341 = ATCC BAA-2682), isolated from blood cultures from two different p
Publikováno v:
Genome Announcements
BASE-Bielefeld Academic Search Engine
Qin, Y, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C 2014, ' Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark. ', Genome Announcements, vol. 2, no. 6, e01334-14 . https://doi.org/10.1128/genomeA.01334-14
Qin, Y, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C G T 2014, ' Genome sequences of three highly copper-resistant Salmonella enterica subsp. I serovar typhimurium strains isolated from pigs in Denmark ', Genome Announcements, vol. 2, no. 6, e01334-14 . https://doi.org/10.1128/genomeA.01334-14
BASE-Bielefeld Academic Search Engine
Qin, Y, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C 2014, ' Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark. ', Genome Announcements, vol. 2, no. 6, e01334-14 . https://doi.org/10.1128/genomeA.01334-14
Qin, Y, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C G T 2014, ' Genome sequences of three highly copper-resistant Salmonella enterica subsp. I serovar typhimurium strains isolated from pigs in Denmark ', Genome Announcements, vol. 2, no. 6, e01334-14 . https://doi.org/10.1128/genomeA.01334-14
Salmonella typhimurium is the causative agent of typhoid fever, which causes nearly 21.7 million illnesses and 217,000 deaths around the world each year. Here, we describe the draft genome sequences of the Salmonella typhimurium strains S7, S15, and
Autor:
Hend A. Alwathnani, Frank Møller Aarestrup, Christopher Rensing, Henrik Hasman, Freja Lea Lüthje
Publikováno v:
Lüthje, F L, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C 2014, ' Genome Sequences of Two Copper-Resistant Escherichia coli Strains Isolated from Copper-Fed Pigs. ', Genome Announcements, vol. 2, no. 6, e01341-14 . https://doi.org/10.1128/genomeA.01341-14
Lüthje, F L, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C G T 2014, ' Genome sequences of two copper-resistant Escherichia coli strains isolated from copper-fed pigs ', Genome Announcements, vol. 2, no. 6 . https://doi.org/10.1128/genomeA.01341-14
Genome Announcements
BASE-Bielefeld Academic Search Engine
Lüthje, F L, Hasman, H, Aarestrup, F M, Alwathnani, H A & Rensing, C G T 2014, ' Genome sequences of two copper-resistant Escherichia coli strains isolated from copper-fed pigs ', Genome Announcements, vol. 2, no. 6 . https://doi.org/10.1128/genomeA.01341-14
Genome Announcements
BASE-Bielefeld Academic Search Engine
The draft genome sequences of two copper-resistant Escherichia coli strains were determined. These had been isolated from copper-fed pigs and contained additional putative operons conferring copper and other metal and metalloid resistances.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a4042728b3495cbf1ce3de5ce141ee1
https://orbit.dtu.dk/en/publications/6f1187f2-9f2c-4828-abb3-4bcae4acbd1c
https://orbit.dtu.dk/en/publications/6f1187f2-9f2c-4828-abb3-4bcae4acbd1c
Autor:
Ole Lund, Vanessa Isabell Jurtz, Frank Møller Aarestrup, Mette Voldby Larsen, Johanne Ahrenfeldt, Martin Christen Frølund Thomsen, Henrik Hasman, José Cisneros
Publikováno v:
PLOS ONE
Thomsen, M C F, Ahrenfeldt, J, Cisneros, J L B, Jurtz, V, Larsen, M V, Hasman, H, Aarestrup, F M & Lund, O 2016, ' A bacterial analysis platform : An integrated system for analysing bacterial whole genome sequencing data for clinical diagnostics and surveillance ', PLOS ONE, vol. 11, no. 6, e0157718 . https://doi.org/10.1371/journal.pone.0157718
PLoS ONE, Vol 11, Iss 6, p e0157718 (2016)
PLoS ONE
Thomsen, M C F, Ahrenfeldt, J, Bellod Cisneros, J L, Jurtz, V I, Larsen, M V, Hasman, H, Aarestrup, F M & Lund, O 2016, ' A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance ' P L o S One, vol 11, no. 6, e0157718 . DOI: 10.1371/journal.pone.0157718
BASE-Bielefeld Academic Search Engine
Thomsen, M C F, Ahrenfeldt, J, Bellod Cisneros, J L, Jurtz, V I, Larsen, M V, Hasman, H, Aarestrup, F M & Lund, O 2016, ' A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance ', P L o S One, vol. 11, no. 6, e0157718 . https://doi.org/10.1371/journal.pone.0157718
Thomsen, M C F, Ahrenfeldt, J, Cisneros, J L B, Jurtz, V, Larsen, M V, Hasman, H, Aarestrup, F M & Lund, O 2016, ' A bacterial analysis platform : An integrated system for analysing bacterial whole genome sequencing data for clinical diagnostics and surveillance ', PLOS ONE, vol. 11, no. 6, e0157718 . https://doi.org/10.1371/journal.pone.0157718
PLoS ONE, Vol 11, Iss 6, p e0157718 (2016)
PLoS ONE
Thomsen, M C F, Ahrenfeldt, J, Bellod Cisneros, J L, Jurtz, V I, Larsen, M V, Hasman, H, Aarestrup, F M & Lund, O 2016, ' A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance ' P L o S One, vol 11, no. 6, e0157718 . DOI: 10.1371/journal.pone.0157718
BASE-Bielefeld Academic Search Engine
Thomsen, M C F, Ahrenfeldt, J, Bellod Cisneros, J L, Jurtz, V I, Larsen, M V, Hasman, H, Aarestrup, F M & Lund, O 2016, ' A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance ', P L o S One, vol. 11, no. 6, e0157718 . https://doi.org/10.1371/journal.pone.0157718
Recent advances in whole genome sequencing have made the technology available for routine use in microbiological laboratories. However, a major obstacle for using this technology is the availability of simple and automatic bioinformatics tools. Based
Autor:
Lisa K. Nolan, Timothy J. Johnson, Eliza Maria Bielak, Chitrita DebRoy, Henrik Hasman, Alessandra Carattoli, Lars Hestbjerg Hansen, Daniela Fortini
Publikováno v:
Plasmid. 68(1)
IncX plasmids are narrow host range plasmids of Enterobactericeae that have been isolated for over 50years. They are known to encode type IV fimbriae enabling their own conjugative transfer, and to provide accessory functions to their host bacteria s