Zobrazeno 1 - 4
of 4
pro vyhledávání: '"Agnieszka Mykowiecka"'
Publikováno v:
Discrete Applied Mathematics. 258:114-122
The gene duplication problem seeks a species tree that reconciles given gene trees with the minimum number of gene duplication events, called gene duplication cost. To better assess species trees inferred by the gene duplication problem we study diam
Publikováno v:
IEEE/ACM transactions on computational biology and bioinformatics. 15(5)
Background: Microbial communities from environmental samples show great diversity as bacteria quickly responds to changes in their ecosystems. To assess the scenario of the actual changes, metagenomics experiments aimed at sequencing genomic DNA from
Publikováno v:
Bioinformatics Research and Applications ISBN: 9783319387819
ISBRA
ISBRA
Reconciliation based cost functions play crucial role in comparing gene family trees with their species tree. To provide a better understanding of tree reconciliation we derive mean formulas for gene duplication, gene loss and gene duplication-loss c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::62be3353d3aba9994c68d47f810eea90
https://doi.org/10.1007/978-3-319-38782-6_16
https://doi.org/10.1007/978-3-319-38782-6_16
Autor:
Paweł Górecki, Agnieszka Mykowiecka
Publikováno v:
Algorithms for Computational Biology ISBN: 9783319388267
AlCoB
AlCoB
Based on the classical non-parametric bootstrapping for phylogenetic trees, we propose a novel bootstrap method to define support for gene duplication and speciation events. While this approach can be used to annotate orthology and paralogy, we show
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c06cf4c375a44073dd635f2b31331001
https://doi.org/10.1007/978-3-319-38827-4_9
https://doi.org/10.1007/978-3-319-38827-4_9