Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Anup Mahurkar"'
Autor:
Victor Felix, Lance Nickel, Owen White, Mike Schor, Joshua Orvis, Olukemi O. Ifeonu, Anup Mahurkar, Jonathan Crabtree, Jain Aluvathingal, Heather Huot Creasy, Michelle G. Giglio, James Matsumura, Carrie McCracken
Publikováno v:
Nucleic Acids Research
The Human Microbiome Project (HMP) explored microbial communities of the human body in both healthy and disease states. Two phases of the HMP (HMP and iHMP) together generated >48TB of data (public and controlled access) from multiple, varied omics s
Autor:
Joana C. Silva, David A. Rasko, Kelly M. Robinson, Ricky S. Adkins, Lisa Sadzewicz, Aziah S. Hawkins, Anup Mahurkar, Sushma Nagaraj, Julie C. Dunning Hotopp, Amol C. Shetty, Claire M. Fraser, Luke J. Tallon, Ivette Santana-Cruz
Publikováno v:
Microbial Genomics
doi: 10.1099/mgen.0.000122.001. As sequencing technologies have evolved, the tools to analyze these sequences have made similar advances. However, for multi-species samples, we observed important and adverse differences in alignment specificity and c
Autor:
Anup Mahurkar, Katherine Huang, Arthur Brady, Nicola Segata, Dirk Gevers, Curtis Huttenhower, Owen White
Publikováno v:
Nucleic Acids Research
Microbial genome sequencing is one of the longest-standing areas of biological database development, but high-throughput, low-cost technologies have increased its throughput to an unprecedented number of new genomes per year. Several thousand microbi
Autor:
Owen White, Katherine H. Phillippy, Anup Mahurkar, Anurhada Ganapathy, Cesar Arze, Neil Hall, Samuel V. Angiuoli, Elodie Ghedin, Suvarna Nadendla, Lynn M. Schriml, Victor Felix, Aaron Gussman
Publikováno v:
Nucleic Acids Research
The Gemina system (http://gemina.igs.umaryland.edu) identifies, standardizes and integrates the outbreak metadata for the breadth of NIAID category A–C viral and bacterial pathogens, thereby providing an investigative and surveillance tool describi
Autor:
Victor Felix, Kevin Galens, Jason M. Inman, Anup Mahurkar, Brett R Whitty, Eduardo Lee, Jennifer R. Wortman, Sreenath Nampally, David R. Riley, Aaron Gussman, Jonathan Crabtree, Owen White, Jaideep P. Sundaram, Joshua Orvis, Samuel V. Angiuoli
Publikováno v:
Bioinformatics
Motivation: The growth of sequence data has been accompanied by an increasing need to analyze data on distributed computer clusters. The use of these systems for routine analysis requires scalable and robust software for data management of large data
Autor:
Jane M. Carlton, Jonathan Crabtree, Amy Egan, Joana C. Silva, Anup Mahurkar, Jonathan H. Badger
Publikováno v:
BMC Bioinformatics, Vol 9, Iss 1, p 524 (2008)
BMC Bioinformatics
BMC Bioinformatics
Background The availability of complete genomic sequences for hundreds of organisms promises to make obtaining genome-wide estimates of substitution rates, selective constraints and other molecular evolution variables of interest an increasingly impo