Zobrazeno 1 - 10
of 122
pro vyhledávání: '"Paul, Thomas A."'
Autor:
Laurent-Philippe Albou, Anushya Muruganujan, Dustin Ebert, Paul Thomas, Tremayne Mushayahama, Huaiyu Mi
Publikováno v:
Protein Sci
Phylogenetics is a powerful tool for analyzing protein sequences, by inferring their evolutionary relationships to other proteins. However, phylogenetics analyses can be challenging: they are computationally expensive and must be performed carefully
Publikováno v:
ACM Transactions on Information Systems. 39:1-23
Conversational information retrieval is a relatively new and fast-developing research area, but conversation itself has been well studied for decades. Researchers have analysed linguistic phenomena such as structure and semantics but also paralinguis
Autor:
Hideo Joho, Katriina Byström, Selina Meyer, Daniel M. Russell, Souvick Ghosh, Ahmed Mourad, Damiano Spina, Daniel McDuff, Paul Thomas, Irene Lopatovska, Sachin Pathiyan Cherumanal, Leigh Clark, Laurianne Sitbon, Johanne R. Trippas, Johannes Kiesel, Alexander Frummet, Paul Owoicho, David Elsweiler, Mary Czerwinski, Nick Craswell
Publikováno v:
ACM SIGIR Forum. 55:1-22
The Future Conversations workshop at CHIIR'21 looked to the future of search, recommendation, and information interaction to ask: where are the opportunities for conversational interactions? What do we need to do to get there? Furthermore, who stands
Publikováno v:
ACM Transactions on Information Systems. 38:1-25
Modern web search engines use many signals to select and rank results in response to queries. However, searchers’ mental models of search are relatively unsophisticated, hindering their ability to use search engines efficiently and effectively. Ann
Autor:
Laurent-Philippe Albou, James P. Balhoff, Paul Thomas, David P. Hill, Christopher J. Mungall, Benjamin M. Good, Seth Carbon, Kimberly Van Auken, Huaiyu Mi, Peter D'Eustachio, Judith A. Blake
Publikováno v:
Bioinformatics (Oxford, England), vol 37, iss 19
Bioinformatics
Bioinformatics
Motivation Gene Ontology Causal Activity Models (GO-CAMs) assemble individual associations of gene products with cellular components, molecular functions and biological processes into causally linked activity flow models. Pathway databases such as th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37ba7a312140574bde9886c0ab5f4477
https://escholarship.org/uc/item/1gq0v0b2
https://escholarship.org/uc/item/1gq0v0b2
Publikováno v:
SIGIR
Traces of searcher behaviour, such as query reformulation or clicks, are commonly used to evaluate a running search engine. The underlying expectation is that these behaviours are proxies for something more important, such as relevance, utility, or s
Publikováno v:
CHIIR
Evaluation is central to Information Retrieval, and is how we compare the quality of systems. One important principle of evaluation is that the measured score should reflect the user's experience with the system. Hence, there should be direct connect
Autor:
Meng Liu, Paul Thomas
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)
BMC Bioinformatics
BMC Bioinformatics
Background Biological knowledge, and therefore Gene Ontology annotation sets, for human genes is incomplete. Recent studies have reported that biases in available GO annotations result in biased estimates of functional similarities of genes, but it i
Autor:
Noemi del Toro, Prisca Lo Surdo, Marcio Luis Acencio, Gianni Cesareni, Astrid Lægreid, Henning Hermjakob, Tamas Korcsmaros, John Zobolas, Glyn Bradley, Sandra Orchard, Luana Licata, Ruth C. Lovering, Paul Thomas, Vasundra Touré, Pablo Porras, Livia Perfetto, Martin Kuiper, Dávid Fazekas
Publikováno v:
Bioinformatics
Motivation Combining multiple layers of information underlying biological complexity into a structured framework represent a challenge in systems biology. A key task is the formalization of such information in models describing how biological entitie
Publikováno v:
PLoS Computational Biology
PLoS Computational Biology, Vol 17, Iss 2, p e1007948 (2021)
PLoS Computational Biology, Vol 17, Iss 2, p e1007948 (2021)
Gene function annotation is important for a variety of downstream analyses of genetic data. But experimental characterization of function remains costly and slow, making computational prediction an important endeavor. Phylogenetic approaches to predi