Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Mario Caccamo"'
Autor:
Richard M. Leggett, Livia V. Patrono, Pablo R. Murcia, Samuel Martin, Mario Caccamo, Martin Ayling
Publikováno v:
Bioinformatics. 39
MotivationThe assembly of contiguous sequence from metagenomic samples presents a particular challenge, due to the presence of multiple species, often closely related, at varying levels of abundance. Capturing diversity within species, for example vi
Autor:
Jinhong Li, Jonathan M. Wright, Sarah Dyer, Mario Caccamo, Philip M. Gilmartin, David Swarbreck, Jonathan M. Cocker
Publikováno v:
Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-13 (2018)
Scientific Reports, Vol 8, Iss 1, Pp 1-13 (2018)
Primula vulgaris (primrose) exhibits heterostyly: plants produce self-incompatible pin- or thrum-form flowers, with anthers and stigma at reciprocal heights. Darwin concluded that this arrangement promotes insect-mediated cross-pollination; later stu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9314328928efa16b7f5a9e03a4ae422
https://ueaeprints.uea.ac.uk/id/eprint/69540/
https://ueaeprints.uea.ac.uk/id/eprint/69540/
Publikováno v:
Bioinformatics
Motivation: For most research approaches, genome analyses are dependent on the existence of a high quality genome reference assembly. However, the local accuracy of an assembly remains difficult to assess and improve. The gEVAL browser allows the use
For most research approaches, genome analyses are dependent on the existence of a high quality genome reference assembly. However, the local accuracy of an assembly remains difficult to assess and improve. The gEVAL browser allows the user to interro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3bfe35b4367cae221977d864112fa3c
https://doi.org/10.1101/038638
https://doi.org/10.1101/038638
Autor:
Manuel, Spannagl, Michael, Alaux, Matthias, Lange, Daniel M, Bolser, Kai C, Bader, Thomas, Letellier, Erik, Kimmel, Raphael, Flores, Cyril, Pommier, Arnaud, Kerhornou, Brandon, Walts, Thomas, Nussbaumer, Christoph, Grabmuller, Jinbo, Chen, Christian, Colmsee, Sebastian, Beier, Martin, Mascher, Thomas, Schmutzer, Daniel, Arend, Anil, Thanki, Ricardo, Ramirez-Gonzalez, Martin, Ayling, Sarah, Ayling, Mario, Caccamo, Klaus F X, Mayer, Uwe, Scholz, Delphine, Steinbach, Hadi, Quesneville, Paul J, Kersey
Publikováno v:
Plant Genome 1 (9), 13 p.. (2016)
PLANT GENOME
PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩
The Plant Genome, Vol 9, Iss 1 (2016)
The Plant Genome
PLANT GENOME
PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩
The Plant Genome, Vol 9, Iss 1 (2016)
The Plant Genome
International audience; The genome sequences of many important Triticeae species, including bread wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.), remained uncharacterized for a long time because their high repeat content, large sizes, a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c64788bcfee06c002c8aeaeae11640d
http://prodinra.inra.fr/record/355347
http://prodinra.inra.fr/record/355347
Autor:
Sarah Ayling, Chunting Lang, Åshild Ergon, Jose J De Vega, Mario Caccamo, Rod A. Wing, René Geurts, Jose Luis Goicoechea, Giles E. D. Oldroyd, Michael T. Abberton, Dave Kudrna, Klaus F. X. Mayer, Iain Donnison, K. J. Webb, Wayne Powell, Charlotte Jones, Stephan Rössner, Leif Skøt, Martin T. Swain, Odd Arne Rognli, Steven Yates, Matthew J. Hegarty
Publikováno v:
Scientific Reports, 5
Scientific Reports
Scientific Reports 5 (2015)
Sci. Rep. 5:17394 (2015)
Scientific Reports
Scientific Reports 5 (2015)
Sci. Rep. 5:17394 (2015)
Red clover (Trifolium pratense L.) is a globally significant forage legume in pastoral livestock farming systems. It is an attractive component of grassland farming, because of its high yield and protein content, nutritional value and ability to fix
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::367c593e907d0c795c7b989089d8347c
https://hdl.handle.net/20.500.11850/108459
https://hdl.handle.net/20.500.11850/108459
Autor:
Gordon M Daly, Richard M Leggett, William Rowe, Samuel Stubbs, Maxim Wilkinson, Ricardo H Ramirez-Gonzalez, Mario Caccamo, William Bernal, Jonathan L Heeney
Publikováno v:
PLoS ONE
PLOS ONE
PloS one
PLoS ONE, Vol 10, Iss 6, p e0129059 (2015)
PLOS ONE
PloS one
PLoS ONE, Vol 10, Iss 6, p e0129059 (2015)
The use of next generation sequencing (NGS) to identify novel viral sequences from eukaryotic tissue samples is challenging. Issues can include the low proportion and copy number of viral reads and the high number of contigs (post-assembly), making s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e6e8e00034848dc3ebd8d5444a7e9aa
https://www.repository.cam.ac.uk/handle/1810/248403
https://www.repository.cam.ac.uk/handle/1810/248403
Publikováno v:
Genome Research. 14:976-987
We describe a novel algorithm for deriving the minimal set of nonredundant transcripts compatible with the splicing structure of a set of ESTs mapped on a genome. Sets of ESTs with compatible splicing are represented by a special type of graph. We de
Publikováno v:
Bioinformatics
Summary: Illumina’s recently released Nextera Long Mate Pair (LMP) kit enables production of jumping libraries of up to 12 kb. The LMP libraries are an invaluable resource for carrying out complex assemblies and other downstream bioinformatics anal
Autor:
Jaroslav Doležel, Mario Caccamo, Michael Alaux, Hana Šimková, Catherine Feuillet, Philippe Leroy, Kellye Eversole, Jan Šafář, Jane Rogers, Jonathan M. Wright, Frédéric Choulet
Publikováno v:
Genomics of Plant Genetic Resources ISBN: 9789400775718
Despite its socio-economic importance and the overall recognition that a reference genome sequence has great value for crop improvement, sequencing the wheat genome has long been considered “impossible” because of the sequencing cost and bioinfor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9a701ce4dec1bb0b8a7641426c229b8e
https://doi.org/10.1007/978-94-007-7572-5_17
https://doi.org/10.1007/978-94-007-7572-5_17