Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Luigi Marchionni"'
Autor:
Alexey Sizykh, Yulia A. Medvedeva, Sarah J. Wheelan, Bahman Afsari, Alexey Stupnikov, Alexander V. Favorov, Luigi Marchionni
Publikováno v:
F1000Research. 10
A Molecular Features Set (MFS), is a result of vast diversity of bioinformatics pipelines. In case when MFS is used for further analysis to distinguish between phenotypes, it is often referred to as a signature. Lack of the “gold standard” for mo
Autor:
Jorge Augusto Hongo, Giovanni Marques de Castro, Alison Pelri Albuquerque Menezes, Agnello César Rios Picorelli, Thieres Tayroni Martins da Silva, Eddie Luidy Imada, Luigi Marchionni, Luiz-Eduardo Del-Bem, Anderson Vieira Chaves, Gabriel Magno de Freitas Almeida, Felipe Campelo, Francisco Pereira Lobo
The increasing availability of high-quality genomic, annotation and phenotypic data for different species contrasts with the lack of general software for comparative genomics that integrates these data types in a statistically sound framework in orde
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e564d6750c4c7f1a27192bb595418a86
https://doi.org/10.1101/2021.08.25.457574
https://doi.org/10.1101/2021.08.25.457574
Publikováno v:
PLoS Computational Biology
PLoS Computational Biology, Vol 17, Iss 6, p e1008944 (2021)
PLoS Computational Biology, Vol 17, Iss 6, p e1008944 (2021)
Cancer cells display massive dysregulation of key regulatory pathways due to now well-catalogued mutations and other DNA-related aberrations. Moreover, enormous heterogeneity has been commonly observed in the identity, frequency and location of these
Autor:
Casey S. Greene, Luigi Marchionni, Jean Y. H. Yang, Piero Carninci, Elana J. Fertig, Nicolas Robine, Fabian J. Theis, Kim-Anh Lȇ Cao, Michiel J. L. de Hoon, Stacey D. Finley, Jerry S.H. Lee, Sara J. C. Gosline, Gregory P. Way, Suzanne Sindi, Anne E. Carpenter, Benilton S. Carvalho
Publikováno v:
PLoS Biol. 19:e3001419 (2021)
PLoS Biology
PLoS Biology, Vol 19, Iss 10, p e3001419 (2021)
PLoS Biology
PLoS Biology, Vol 19, Iss 10, p e3001419 (2021)
Evolving in sync with the computation revolution over the past 30 years, computational biology has emerged as a mature scientific field. While the field has made major contributions toward improving scientific knowledge and human health, individual c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72ff2298280b32b743d434588068bd39
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=63257
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=63257
Autor:
Luigi Marchionni, John C. Earls, Nathan D. Price, Theo A. Knijnenburg, Wikum Dinalankara, Donald Geman, Priyanka Baloni
Publikováno v:
Metabolites
Volume 11
Issue 1
Metabolites, Vol 11, Iss 20, p 20 (2021)
Volume 11
Issue 1
Metabolites, Vol 11, Iss 20, p 20 (2021)
Cancer cells are adept at reprogramming energy metabolism, and the precise manifestation of this metabolic reprogramming exhibits heterogeneity across individuals (and from cell to cell). In this study, we analyzed the metabolic differences between i
Autor:
Claudio Schneider, Malte Thodberg, Akira Hasegawa, Haruhiko Koseki, Saumya Agrawal, Harukazu Suzuki, Carlo Vittorio Cannistraci, Yulia A. Medvedeva, Bogumil Kaczkowski, Jen Chien Chang, Youtaro Shibayama, Chi Wai Yip, Ivan Antonov, Takahiro Suzuki, Jayson Harshbarger, Mariola Kurowska-Stolarska, Luigi Marchionni, Leonie Roos, Chikashi Terao, Supat Thongjuea, Melissa Cardon, Ferenc Müller, Christopher J. F. Cameron, Hideya Kawaji, Naoto Kondo, Vsevolod J. Makeev, Alessandro Bonetti, Josée Dostie, Reto Guler, Kazuhiro R. Nitta, Shuhei Noguchi, Jasmine Li, Altuna Akalin, Michiel J. L. de Hoon, Nicholas J. Parkinson, Emily Kawabata, Chung-Chau Hon, Albin Sandelin, Tsugumi Kawashima, Callum J.C. Parr, Roberto Verardo, Aditi Kanhere, Roderic Guigó, Ivan V. Kulakovskiy, Igor Ulitsky, Pillay Sanjana, S. Thomas Kelly, Michael M. Hoffman, Yasushi Okazaki, Boris Lenhard, Yari Ciani, Andreas Lennartsson, Vidisha Tripathi, Imad Abugessaisa, Erik Arner, Denis Paquette, Ramil N. Nurtdinov, Robert Young, Chinatsu Yamamoto, Ken Yagi, Jordan A. Ramilowski, Alistair R. R. Forrest, Kayoko Yasuzawa, Aki Minoda, Jessica Severin, Peter Heutink, Norihito Hayatsu, Hiromi Nishiyori, Frank Brombacher, Tsukasa Kouno, Juha Kere, Lusy Handoko, J Kenneth Baillie, Andrew T. Kwon, Howard Y. Chang, Masayoshi Itoh, Yuki Hasegawa, Sakari Kauppinen, Andreas Petri, Ching Ooi, Luca Ducoli, Kosuke Hashimoto, Suzannah C. Szumowski, Tetsuro Hirose, Ryan Cardenas, Patrizia Rizzu, Eddie Luidy Imada, Colin A. Semple, Anton Kratz, Valerio Orlando, Alexander V. Favorov, Martin S. Taylor, Takeya Kasukawa, Joachim Luginbühl, Divya M. Sivaraman, Piero Carninci, Fernando López-Redondo, Hidemasa Bono, Yukihiko Noro, Marina Lizio, Beatrice Borsari, Mitsuyoshi Murata, Juliette Gimenez, Mickaël Mendez, Diego Fernando Sánchez Martinez, Diego Garrido, Michihira Tagami, Manuel Muñoz-Aguirre, Noa Gil, Shiori Maeda, John F. Ouyang, Jeffrey T. Leek, Alexandre Fort, Miki Kojima, Owen J. L. Rackham, Ilya E. Vorontsov, Jay W. Shin
Publikováno v:
Genome Res
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1da539fc9c0c9b9e978923d3c30cbf64
https://europepmc.org/articles/PMC7545137/
https://europepmc.org/articles/PMC7545137/
Autor:
Jayson Harshbarger, Hideya Kawaji, Diego Garrido, Michiel J. L. de Hoon, Tsugumi Kawashima, Lusy Handoko, Masayoshi Itoh, John F. Ouyang, Michihira Tagami, Kosuke Hashimoto, Andreas Petri, Patrizia Rizzu, Christopher J. F. Cameron, Tetsuro Hirose, Marina Lizio, Beatrice Borsari, Robert Young, Vidisha Tripathi, Chung-Chau Hon, Joachim Luginbühl, Ryan Cardenas, Jasmine Li Ching Ooi, Chikashi Terao, Vsevolod J. Makeev, Aki Minoda, Colin A. Semple, Alexander V. Favorov, Yasushi Okazaki, Kazuhiro R. Nitta, Mitsuyoshi Murata, Juha Kere, Harukazu Suzuki, Bogumil Kaczkowski, Fernando López-Redondo, Ivan Antonov, Mickaël Mendez, Diego Fernando Sánchez Martinez, Michael M. Hoffman, Chi Wai Yip, Imad Abugessaisa, Pillay Sanjana, Sakari Kauppinen, Erik Arner, Denis Paquette, Norihito Hayatsu, Ramil N. Nurtdinov, Mariola Kurowska-Stolarska, Luigi Marchionni, Takahiro Suzuki, Claudio Schneider, J Kenneth Baillie, Andrew T. Kwon, Saumya Agrawal, Carlo Vittorio Cannistraci, Roberto Verardo, Suzannah C. Szumowski, Frank Brombacher, Tsukasa Kouno, Boris Lenhard, Noa Gil, Manuel Muñoz-Aguirre, Shiori Maeda, Luca Ducoli, Emily Kawabata, Valerio Orlando, Leonie Roos, Divya M. Sivaraman, Youtaro Shibayama, Supat Thongjuea, Piero Carninci, Kayoko Yasuzawa, Jeffrey T. Leek, Alexandre Fort, Hidemasa Bono, Peter Heutink, Takeya Kasukawa, Alessandro Bonetti, Jen-Chien Chang, Josée Dostie, Naoto Kondo, Ferenc Müller, Nicholas J. Parkinson, Haruhiko Koseki, Malte Thodberg, Callum J.C. Parr, Anton Kratz, Miki Kojima, Reto Guler, Jordan A. Ramilowski, Alistair R. R. Forrest, Owen J. L. Rackham, Igor Ulitsky, Yari Ciani, Howard Y. Chang, Roderic Guigó, Jay W. Shin, Andreas Lennartsson, Ivan V. Kulakovskiy, Jessica Severin, Ilya E. Vorontsov, Melissa Cardon, Ken Yagi, Chinatsu Yamamoto, Yukihiko Noro, Juliette Gimenez, Shuhei Noguchi, Yuki Hasegawa, Eddie Luidy Imada, Martin S. Taylor, Yulia A. Medvedeva, Altuna Akalin, Albin Sandelin, Aditi Kanhere, S. Thomas Kelly, Hiromi Nishiyori, Akira Hasegawa
Publikováno v:
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C JF, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, no. 7, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Genome Research
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, Lopez-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Martinez, D F S, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, no. 7, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Genome Res
Genome research 30(7), 1060-1072 (2020). doi:10.1101/gr.254219.119
Genome Research
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, Lopez-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Martinez, D F S, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, no. 7, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Genome Res
Genome research 30(7), 1060-1072 (2020). doi:10.1101/gr.254219.119
Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we systematically knocked down the expression of 285 lncRNAs in human derm
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9cf2df2c4fb7df1b0612e3c14c9242a6
https://vbn.aau.dk/da/publications/9945d8a2-24bb-4411-ada7-c0664ae247f1
https://vbn.aau.dk/da/publications/9945d8a2-24bb-4411-ada7-c0664ae247f1
Autor:
Luigi Marchionni, Naoto Kondo, Francisco Lobo-Pereira, Eddie Luidy Imada, Wikum Dinalankara, Jeffrey T. Leek, Christopher Wilks, Takeya Kasukawa, Masayoshi Itoh, Andrew E. Jaffe, Jay W. Shin, Leonardo Collado-Torres, Harukazu Suzuki, Chung-Chau Hon, Aleksey Stupnikov, Glória Regina Franco, Piero Carninci, Kayoko Yasuzawa, Alexander V. Favorov, Chi Wai Yip, Tejasvi Matam, Diego F. Sanchez, Ben Langmead, Michiel J. L. de Hoon
Publikováno v:
Genome Res
Long noncoding RNAs (lncRNAs) have emerged as key coordinators of biological and cellular processes. Characterizing lncRNA expression across cells and tissues is key to understanding their role in determining phenotypes, including human diseases. We
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5201df4f90c8235ba03c353ae9ec2cb2
https://europepmc.org/articles/PMC7397872/
https://europepmc.org/articles/PMC7397872/
Publikováno v:
Cancer Research. 81:173-173
In this work we develop a framework which allows for a systematic analysis of joint DNA and putative downstream RNA effects in cancer data cohorts. Using the Reactome database, we extract gene pairs that are linked by known mechanistic connections. S
Autor:
Howard Y. Chang, Manuel Muñoz-Aguirre, Roderic Guigó, Andreas Lennartsson, Chinatsu Yamamoto, Robert Young, Ramil N. Nurtdinov, Jasmine Li Ching Ooi, Christopher J. F. Cameron, Andreas Petri, Valerio Orlando, Tetsuro Hirose, Vidisha Tripathi, Tsugumi Kawashima, Joachim Luginbühl, Ilya E. Vorontsov, Diego Garrido, Jeffrey T. Leek, Alexandre Fort, Ryan Cardenas, Colin A. Semple, Aki Minoda, Takeya Kasukawa, Michiel J. L. de Hoon, Alexander V. Favorov, Peter Heutink, Harukazu Suzuki, Jordan A. Ramilowski, Alistair R. R. Forrest, Michihira Tagami, Imad Abugessaisa, Malte Thodberg, J Kenneth Baillie, Andrew T. Kwon, Juha Kere, Ivan V. Kulakovskiy, Jen-Chien Chang, Yuki Hasegawa, Melissa Cardon, Kazuhiro R. Nitta, John F. Ouyang, Jay W. Shin, Noa Gil, Jessica Severin, Reto Guler, Shiori Maeda, Eddie Luidy Imada, Emily Kawabata, Sakari Kauppinen, Hideya Kawaji, Pillay Sanjana, Miki Kojima, Yulia A. Medvedeva, Igor Ulitsky, Suzannah C. Szumowski, Martin S. Taylor, Michael M. Hoffman, Denis Paquette, Yari Ciani, Yukihiko Noro, S. Thomas Kelly, Mickaël Mendez, Diego Fernando Sánchez Martinez, Lusy Handoko, Jayson Harshbarger, Roberto Verardo, Owen J. L. Rackham, Bogumil Kaczkowski, Ivan Antonov, Frank Brombacher, Akira Hasegawa, Tsukasa Kouno, Fernando López-Redondo, Mariola Kurowska-Stolarska, Luigi Marchionni, Supat Thongjuea, N. Hayatsu, Ken Yagi, Juliette Gimenez, Anton Kratz, Hiromi Nishiyori, Shuhei Noguchi, Kayoko Yasuzawa, Chi Wai Yip, Chung-Chau Hon, Altuna Akalin, Albin Sandelin, Aditi Kanhere, Marina Lizio, Beatrice Borsari, Chikashi Terao, Vsevolod J. Makeev, Luca Ducoli, Alessandro Bonetti, Josée Dostie, Divya M. Sivaraman, Masayoshi Itoh, Piero Carninci, Hidemasa Bono, Erik Arner, Kosuke Hashimoto, Yasushi Okazaki, Patrizia Rizzu, Mitsuyoshi Murata, Callum J.C. Parr, Boris Lenhard, Ferenc Müller, Claudio Schneider, Youtaro Shibayama, Saumya Agrawal, Carlo Vittorio Cannistraci, Leonie Roos, Naoto Kondo, Nicholas J. Parkinson, Haruhiko Koseki, Takahiro Suzuki
Long non-coding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian genomes and yet, their functions remain largely unknown. We systematically knockdown 285 lncRNAs expression in human dermal fibroblasts and quantified cellular gro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4a46b53a4c59f5aa48e139d767d36993