Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Aleksandar Milosavljevic"'
Autor:
Ranine Ghamrawi, Igor Velickovic, Ognjen Milicevic, Wendy M. White, Lillian Rosa Thistlethwaite, Julie M. Cunningham, Aleksandar Milosavljevic, Natasa M. Milic, Vesna D. Garovic
Publikováno v:
Frontiers in Bioengineering and Biotechnology, Vol 9 (2022)
Background: We aimed to assess the extent to which the buffy coat DNA methylome is representative of methylation patterns in constitutive white blood cell (WBC) types in normal pregnancy.Methods: A comparison of differential methylation of buffy coat
Externí odkaz:
https://doaj.org/article/5f9874d177e44294b8e6b2fd51f386a3
Autor:
Emily L. LaPlante, Alessandra Stürchler, Robert Fullem, David Chen, Anne C. Starner, Emmanuel Esquivel, Eric Alsop, Andrew R. Jackson, Ionita Ghiran, Getulio Pereira, Joel Rozowsky, Justin Chang, Mark B. Gerstein, Roger P. Alexander, Matthew E. Roth, Jeffrey L. Franklin, Robert J. Coffey, Robert L. Raffai, Isabelle M. Mansuy, Stavros Stavrakis, Andrew J. deMello, Louise C. Laurent, Yi-Ting Wang, Chia-Feng Tsai, Tao Liu, Jennifer Jones, Kendall Van Keuren-Jensen, Eric Van Nostrand, Bogdan Mateescu, Aleksandar Milosavljevic
Publikováno v:
Cell genomics, vol 3, iss 5
Although the role of RNA binding proteins (RBPs) in extracellular RNA (exRNA) biology is well established, their exRNA cargo and distribution across biofluids are largely unknown. To address this gap, we extend the exRNA Atlas resource by mapping exR
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74746fd163b449889a453e8421173f54
https://escholarship.org/uc/item/0sd5f4jf
https://escholarship.org/uc/item/0sd5f4jf
Autor:
Oscar Murillo, David J. Galas, Andrew I. Su, Liang Wang, Saumya Das, Parham Nejad, Srimeenakshi Srinivasan, Aleksandar Milosavljevic, Andrew R. Jackson, Bridget Simonson, Xuan Zhang, Ashish Yeri, Navneet Dogra, Anil K. Sood, Alexander R. Pico, Stacey M. Gifford, Anders Riutta, Roopali Gandhi, Louise C. Laurent, Jennifer Jones, Neethu Shah, Carlos Cordon-Cardo, Kirsty Danielson, Timur R. Galeev, Matthew E. Roth, Kendall Van Keuren-Jensen, Robert R. Kitchen, Courtney Moeller, William Thistlethwaite, Allen Chung, Roger P. Alexander, David T.W. Wong, Jonathan Warrell, Tushar Patel, Justyna Filant, Kristina Hanspers, Gustavo Stolovitzky, Sai Lakshmi Subramanian, Leonora Balaj, David K. Wong, Mark Gerstein, Kei-Hoi Cheung, Sebastian Burgstaller-Muehlbacher, Ashutosh K. Tewari, Robert L. Raffai, Kamlesh K Yadav, Anu Paul, Benjamin H. Wunsch, Joel Rozowsky, Rocco Lucero, Lisa M. Miller Jenkins, Joshua T. Smith, Joshua A. Welsh, Ravi V. Shah, James A. Diao, Clara D. Laurent, Chunlei Wu, Mehmet Eren Ahsen
Publikováno v:
Murillo, Oscar D; Thistlethwaite, William; Rozowsky, Joel; Subramanian, Sai Lakshmi; Lucero, Rocco; Shah, Neethu; et al.(2019). exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.. Cell, 177(2), 463-477.e15. doi: 10.1016/j.cell.2019.02.018. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/96q5s1gm
Cell, vol 177, iss 2
Cell, vol 177, iss 2
To develop a map of cell-cell communication mediated by extracellular RNA (exRNA), the NIH Extracellular RNA Communication Consortium created the exRNA Atlas resource (https://exrna-atlas.org). The Atlas version 4P1 hosts 5,309 exRNA-seq and exRNA qP
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::71c5e2f9959045be7579c2e8ebe7adec
http://www.escholarship.org/uc/item/96q5s1gm
http://www.escholarship.org/uc/item/96q5s1gm
Autor:
Louise C. Laurent, Srimeenakshi Srinivasan, Eric Tai, Xandra O. Breakefield, Matthew E. Roth, Rocco Lucero, Pike See Cheah, Zhiyun Wei, Alessandro Sammarco, Aleksandar Milosavljevic, Valentina Zappulli, Anna M. Krichevsky, Oscar Murillo, David T. Ting
Publikováno v:
Cell reports, vol 30, iss 7
Cell Reports, Vol 30, Iss 7, Pp 2065-2074.e4 (2020)
Cell Reports, Vol 30, Iss 7, Pp 2065-2074.e4 (2020)
Summary: Glioblastoma (GBM) is characterized by aberrant vascularization and a complex tumor microenvironment. The failure of anti-angiogenic therapies suggests pathways of GBM neovascularization, possibly attributable to glioblastoma stem cells (GSC
Autor:
Karin B. Michels, Christoph Bock, Aleksandar Milosavljevic, Charles B. Epstein, Alexander Meissner, John M. Greally, Kimberly D. Siegmund, E. Andres Houseman, Rafael A. Irizarry, Benedetta Izzi, Sarah Dedeurwaerder, Karl T. Kelsey, Ivo Gut, Alexandra M. Binder
Publikováno v:
Nature Methods. 10:949-955
Epigenome-wide association studies (EWAS) hold promise for the detection of new regulatory mechanisms that may be susceptible to modification by environmental and lifestyle factors affecting susceptibility to disease. Epigenome-wide screening methods
Autor:
Aleksandar Milosavljevic, Peggy J. Farnham, Marco A. Marra, Joseph R. Ecker, Joseph F. Costello, Bradley E. Bernstein, Manolis Kellis, Alexander Meissner, Tarjei S. Mikkelsen, John A. Stamatoyannopoulos, Bing Ren, Martin Hirst, Eric S. Lander, James A. Thomson, Arthur L. Beaudet
Publikováno v:
Nature Biotechnology. 28:1045-1048
The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human dis
Autor:
Aleksandar Milosavljevic, Ya-Chi Lin, Jenny Drnevich, Jayantha B. Tennakoon, Preethi H. Gunaratne, Sam Griffiths-Jones, David F. Clayton, Ashley Benham, Chad J. Creighton, Cristian Coarfa, Michael Watson, Jong H. Kim
Publikováno v:
Gunaratne, P H, Lin, Y C, Benham, A L, Drnevich, J, Coarfa, C, Tennakoon, J B, Creighton, C J, Kim, J H, Milosavljevic, A, Watson, M, Griffiths-Jones, S & Clayton, D F 2011, ' Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain ', BMC Genomics, vol. 12, 277 . https://doi.org/10.1186/1471-2164-12-277
BMC Genomics, Vol 12, Iss 1, p 277 (2011)
BMC Genomics
Gunaratne, P H, Lin, Y C, Benham, A L, Drnevich, J, Coarfa, C, Tennakoon, J B, Creighton, C J, Kim, J H, Milosavljevic, A, Watson, M, Griffiths-Jones, S & Clayton, D F 2011, ' Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain ', BMC Genomics, vol. 12, no. 277, pp. 14 . https://doi.org/10.1186/1471-2164-12-277
BMC Genomics, Vol 12, Iss 1, p 277 (2011)
BMC Genomics
Gunaratne, P H, Lin, Y C, Benham, A L, Drnevich, J, Coarfa, C, Tennakoon, J B, Creighton, C J, Kim, J H, Milosavljevic, A, Watson, M, Griffiths-Jones, S & Clayton, D F 2011, ' Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain ', BMC Genomics, vol. 12, no. 277, pp. 14 . https://doi.org/10.1186/1471-2164-12-277
BackgroundIn an important model for neuroscience, songbirds learn to discriminate songs they hear during tape-recorded playbacks, as demonstrated by song-specific habituation of both behavioral and neurogenomic responses in the auditory forebrain. We
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5fba268aa42cae1a47aa435b2f44542e
https://doi.org/10.1186/1471-2164-12-277
https://doi.org/10.1186/1471-2164-12-277
Autor:
Bing Ren, Joseph A. Ecker, Xin Zhou, Tracy J. Ballinger, Wei Li, Junchen Gu, Robert A. Waterland, Marco A. Marra, Sara L. Downey, Kevin J. Forsberg, Yuanxin Xi, Mattia Pelizzola, Christoph Bock, R. Alan Harris, Allen Delaney, Andreas Gnirke, Raman P. Nagarajan, Shaun D. Fouse, Peggy J. Farnham, Cristian Coarfa, Hongcang Gu, Alexander Meissner, Michael Q. Zhang, Ting Wang, Adam B. Olshen, Wen-Yu Chung, R. David Hawkins, Ryan Lister, Brett E. Johnson, Bradley E. Bernstein, David Haussler, Charles B. Epstein, Henriette O'Geen, Chibo Hong, Lorigail Echipare, Yongjun Zhao, Martin Hirst, Joseph F. Costello, Aleksandar Milosavljevic
Publikováno v:
Nature biotechnology, vol 28, iss 10
Analysis of DNA methylation patterns relies increasingly on sequencing-based profiling methods. The four most frequently used sequencing-based technologies are the bisulfite-based methods MethylC-seq and reduced representation bisulfite sequencing (R
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f285c87b9394ab6a7a215a37b3cb44d
https://escholarship.org/uc/item/3xm4j4j1
https://escholarship.org/uc/item/3xm4j4j1
Autor:
Cristian Coarfa, Xiang Qin, James Versalovic, Aleksandar Milosavljevic, Jun Ma, Kjersti Aagaard, Penelope E. Bonnen
Publikováno v:
BMC Genomics
Background Although our microbial community and genomes (the human microbiome) outnumber our genome by several orders of magnitude, to what extent the human host genetic complement informs the microbiota composition is not clear. The Human Microbiome
Autor:
Ned H. Kalin, Yanru Ren, Jeffrey Rogers, Donna M. Muzny, Muthuswamy Raveendran, Aleksandar Milosavljevic, Gloria L. Fawcett, Ronald A. Harris, David K. Chen, David Rio Deiros, David A. Wheeler, Fuli Yu, Steven E. Shelton, Jeffrey G. Reid, Richard A. Gibbs, Kimberly C Worley
Publikováno v:
BMC Genomics
BMC Genomics, Vol 12, Iss 1, p 311 (2011)
BMC Genomics, Vol 12, Iss 1, p 311 (2011)
Background Rhesus macaques are the most widely utilized nonhuman primate model in biomedical research. Previous efforts have validated fewer than 900 single nucleotide polymorphisms (SNPs) in this species, which limits opportunities for genetic studi