Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Lukas Reiter"'
Publikováno v:
Molecular & Cellular Proteomics : MCP
DIA profiles of complex biological matrices such as tissues can contain quantitative interferences, and the interferences at the MS1 and the MS2 signals are often independent. We developed a statistical procedure incorporating both MS1 and MS2 quanti
Autor:
Oliver Rinner, Ornella Cominetti, Jan Muntel, Jörg Hager, Charlotte Macron, Arne Astrup, Roland Bruderer, Wim H. M. Saris, Sebastian Müller, Loïc Dayon, Armand Valsesia, Jérôme Carayol, Oliver M. Bernhardt, Lukas Reiter, Tejas Gandhi
Publikováno v:
Molecular & Cellular Proteomics, 18(6):ARTN RA118.001288, 1242-1254. American Society for Biochemistry and Molecular Biology, Inc.
Molecular & Cellular Proteomics : MCP
Bruderer, R, Muntel, J, Müller, S, Bernhardt, O M, Gandhi, T, Cominetti, O, Macron, C, Carayol, J, Rinner, O, Astrup, A, Saris, W H M, Hager, J, Valsesia, A, Dayon, L & Reiter, L 2019, ' Analysis of 1508 plasma samples by capillary-flow data-independent acquisition profiles proteomics of weight loss and maintenance ', Molecular and Cellular Proteomics, vol. 18, no. 6, pp. 1242-1254 . https://doi.org/10.1074/mcp.RA118.001288
Molecular & Cellular Proteomics : MCP
Bruderer, R, Muntel, J, Müller, S, Bernhardt, O M, Gandhi, T, Cominetti, O, Macron, C, Carayol, J, Rinner, O, Astrup, A, Saris, W H M, Hager, J, Valsesia, A, Dayon, L & Reiter, L 2019, ' Analysis of 1508 plasma samples by capillary-flow data-independent acquisition profiles proteomics of weight loss and maintenance ', Molecular and Cellular Proteomics, vol. 18, no. 6, pp. 1242-1254 . https://doi.org/10.1074/mcp.RA118.001288
We established a robust capillary-flow data-independent acquisition MS platform capable of measuring 31 plasma proteomes per day without the need of repeated acquisition of the same sample. We acquired 1508 samples of the DiOGenes study (multicentere
Autor:
Ting Huang, Erik Verschueren, Yasset Perez-Riverol, Bernd Wollscheid, Ruth Hüttenhain, Jeremy Carver, Eduard Sabidó, Olga Vitek, Tom Dunkley, Guo Ci Teo, Oliver M. Bernhardt, Benjamin Pullman, Nuno Bandeira, Maria P. Pavlou, Lukas Reiter, Meena Choi, Cristina Chiva, Jan Muntel, Manuel Tzouros, Tsung-Heng Tsai, Alexey I. Nesvizhskii, Maik Müller, Sandra Goetze
Publikováno v:
Nature Methods, 17 (10)
Nature methods
Nature Methods
Nature methods
Nature Methods
MassIVE.quant is a repository infrastructure and data resource for reproducible quantitative mass spectrometry-based proteomics, which is compatible with all mass spectrometry data acquisition types and computational analysis tools. A branch structur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d09560dbcf39706572c935962940d6e9
https://hdl.handle.net/20.500.11850/443807
https://hdl.handle.net/20.500.11850/443807
Autor:
Yansheng Liu, Hongwen Zhu, Chongde Wu, Hu Zhou, Zdenek Hodny, George Rosenberger, Barbora Salovska, Tejas Gandhi, Pierre-Luc Germain, Lukas Reiter, Max Frank, Wenxue Li
Publikováno v:
Molecular Systems Biology, Vol 16, Iss 3, Pp n/a-n/a (2020)
Molecular Systems Biology
Molecular Systems Biology, 16 (3)
Molecular Systems Biology
Molecular Systems Biology, 16 (3)
Profiling of biological relationships between different molecular layers dissects regulatory mechanisms that ultimately determine cellular function. To thoroughly assess the role of protein post‐translational turnover, we devised a strategy combini
Autor:
Ian Lienert, John M. Denu, Oliver M. Bernhardt, Jing Fan, Michael J. Smallegan, Lukas Reiter, Josue Baeza, Tejas Gandhi, Alexis J. Lawton
Publikováno v:
J Proteome Res
Protein acetylation is a widespread post-translational modification implicated in many cellular processes. Recent advances in mass spectrometry have enabled the cataloging of thousands of sites throughout the cell; however, identifying regulatory ace
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c15af562e6e1b231b362b08a2f280221
Autor:
D. R. Mani, Jennifer E. Van Eyk, Russell P. Grant, Gordon Whiteley, Juan A. Oses-Prieto, Amanda G. Paulovich, Robert Bethem, Arun P. Wiita, Raymond R. Townsend, Jerry S.H. Lee, John M. Koomen, Bradley L. Ackermann, Hendrik Neubert, Ruth Hüttenhain, Josip Blonder, Olga Vitek, Daniel W. Chan, Eric Kuhn, Susan T. Weintraub, Henry Rodriguez, Andrew N. Hoofnagle, Emily S. Boja, Susan E. Abbatiello, Alma L. Burlingame, Elizabeth Mansfield, Lukas Reiter, Eric W. Deutsch, Sang Won Lee, Bruno Domon, Ralph A. Bradshaw, Michael T. Boyne, Pothur R. Srinivas, James C. Ritchie, Nader Rifai, Hasmik Keshishian, Steven A. Carr, Robert L. Moritz, Tao Liu, Brendan MacLean, Daniel C. Liebler, Julianne Cook Botelho, Leigh Anderson, Ruedi Aebersold, Christoph H. Borchers, Christopher R. Kinsinger
Publikováno v:
Molecular & Cellular Proteomics
Molecular & cellular proteomics : MCP, vol 13, iss 3
Molecular & Cellular Proteomics : MCP
Molecular & cellular proteomics : MCP, vol 13, iss 3
Molecular & Cellular Proteomics : MCP
Adoption of targeted mass spectrometry (MS) approaches such as multiple reaction monitoring (MRM) to study biological and biomedical questions is well underway in the proteomics community. Successful application depends on the ability to generate rel
Autor:
Artur Kibler, Aleksej Zelezniak, Michael Muelleder, Markus Ralser, Jakob Vowinckel, Roland Bruderer, Lukas Reiter
While quantitative proteomics is a key technology in biological research, the routine industry and diagnostics application is so far still limited by a moderate throughput, data consistency and robustness. In part, the restrictions emerge in the prot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57f2ee169f831fd97cae07ab31fcb1a8
Autor:
Roeland Costenoble, Paola Picotti, Lukas Reiter, Robert Stallmach, Matthias Heinemann, Ruedi Aebersold, Uwe Sauer
Publikováno v:
Molecular Systems Biology, 7(1):464. Wiley-Blackwell
Molecular Systems Biology
Molecular Systems Biology, 7 (1)
Molecular Systems Biology
Molecular Systems Biology, 7 (1)
With a targeted proteomic approach, we could quantify 90% of the enzymes involved in carbon and amino-acid metabolism in yeast, including complete isoenzyme families, throughout a set of different metabolic states. The data, interpreted through flux
Autor:
Paola Picotti, Michael O. Hengartner, Ruedi Aebersold, Mi-Youn Brusniak, Martin Beck, Lukas Reiter, Ruth Hüttenhain, Oliver Rinner
Publikováno v:
Nature methods
Nature Methods
Nature Methods
Selected reaction monitoring (SRM) is a targeted mass spectrometric method that is increasingly used in proteomics for the detection and quantification of sets of preselected proteins at high sensitivity, reproducibility and accuracy. Currently, data
Autor:
Helge Grosshans, Cherie Blenkiron, Lange, Sabine P. Schrimpf, Nicolas J. Lehrbach, Erica Bogan, Xavier C. Ding, Ruedi Aebersold, Marko Jovanovic, Michael O. Hengartner, Markus Weiss, Paola Picotti, BA Hurschler, Lukas Reiter, Eric A. Miska
Publikováno v:
Nature Methods
Efficient experimental strategies are needed to validate computationally predicted microRNA (miRNA) target genes. Here we present a large-scale targeted proteomics approach to validate predicted miRNA targets in Caenorhabditis elegans. Using selected