Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Anup Mahurkar"'
Autor:
Matthew Chung, Anup Mahurkar, David A. Rasko, Jonathan Livny, Christina A. Cuomo, Vincent M. Bruno, Julie C. Dunning Hotopp, José F. Muñoz, Amol C. Shetty
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-23 (2021)
Genome Biology
Genome Biology
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially expressed genes from multiple species originating from a single RNA sample, termed dual or multi-species transcriptomics. Compared to single-species different
Autor:
Julie C. Dunning Hotopp, Katie R. Bradwell, Lisa Sadzewicz, John S. Mattick, David A. Rasko, Luke J. Tallon, Anup Mahurkar, Claire M. Fraser, Matthew Chung, Amol C. Shetty, Ricky S. Adkins
Publikováno v:
mSystems
mSystems, Vol 6, Iss 1 (2021)
mSystems, Vol 6, Iss 1 (2021)
Most currently available quantification tools for transcriptomics analyses have been designed for human data sets, in which full-length transcript sequences, including the untranslated regions, are well annotated. In most prokaryotic systems, full-le
Autor:
Z. Josh Huang, Valentine Svensson, Christine Rimorin, Sebastian Preissl, Qiwen Hu, Yang Eric Li, Carlo Colantuoni, Olivier Poirion, Darren Bertagnolli, Vasilis Ntranos, Antonio Pinto-Duarte, Megan Crow, Delissa McMillen, Evan Z. Macosko, Nick Dee, Zizhen Yao, Hongkui Zeng, Hector Roux de Bézieux, Bing Ren, Sheng-Yong Niu, Brian R. Herb, Jacinta Lucero, Ricky S. Adkins, Rongxin Fang, Eeshit Dhaval Vaishnav, Peter V. Kharchenko, Charles R. Vanderburg, Xiaomeng Hou, Joshua D. Welch, Angeline Rivkin, Sandrine Dudoit, Michael Tieu, Michael Hawrylycz, Jayaram Kancherla, Anup Mahurkar, Victor Felix, Lior Pachter, Jonathan Crabtree, Ronna Hertzano, Héctor Corrada Bravo, Aviv Regev, Wayne I. Doyle, Fangming Xie, Owen White, A. Sina Booeshaghi, Chongyuan Luo, Jeff Goldy, Andrew I. Aldrige, Joseph R. Ecker, Naeem Nadaf, Elizabeth Purdom, Hanqing Liu, Eran A. Mukamel, Kanan Lathia, Kelly Street, Michelle G. Giglio, Xinxin Wang, Julia K. Osteen, Olivia Fong, Bosiljka Tasic, Matthew Kroll, Tommaso Biancalani, Thanh Pham, John Ngai, Amy Torkelson, Thuc Nghi Nguyen, Ann Bartlett, Kimberly A. Smith, Kirsten Crichton, Herman Tung, Heather Huot Creasy, Josef Sulc, M. Margarita Behrens, Cindy T. J. van Velthoven, Koen Van den Berge, Jesse Gillis, Joseph R. Nery, Tamara Casper, Elizabeth L. Dougherty, Davide Risso, Seth A. Ament, Stephan Fischer, Joshua Orvis
Single cell transcriptomics has transformed the characterization of brain cell identity by providing quantitative molecular signatures for large, unbiased samples of brain cell populations. With the proliferation of taxonomies based on individual dat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7633422e96f93e32198625f13e63944
https://doi.org/10.1101/2020.02.29.970558
https://doi.org/10.1101/2020.02.29.970558
Autor:
Joshua Orvis, Curtis Huttenhower, Jason Lloyd-Price, Gholamali Rahnavard, Arthur Brady, A. Brantley Hall, Rob Knight, Anup Mahurkar, Heather Huot Creasy, Jonathan Crabtree, Carrie McCracken, Michelle G. Giglio, Daniel McDonald, Eric A. Franzosa, Owen White
Publikováno v:
Nature, vol 550, iss 7674
Nature
Nature
The characterization of baseline microbial and functional diversity in the human microbiome has enabled studies of microbiome-related disease, diversity, biogeography, and molecular function. The National Institutes of Health Human Microbiome Project
Autor:
John S. Mattick, Sonia Agrawal, Anup Mahurkar, Robin E. Bromley, Ben Sparklin, Jonathan Crabtree, Julie C. Dunning Hotopp, James Matsumura, David R. Riley
Publikováno v:
Microbiology Resource Announcements
Analysis of sequence read pairs can be essential for characterizing structural variation, including junction-spanning pairs of reads (JSPRs) suggesting recent lateral/horizontal gene transfer. TwinBLAST can be used to facilitate this analysis of JSPR
Autor:
Mari A. Griffioen, Amol C. Shetty, Shijun Zhu, Anup Mahurkar, Hyungsuk Kim, Heather Huot-Creasy, Carrie McCracken, Cameron B Lassiter, Debra E. Lyon, Cynthia L. Renn, Wendy A. Henderson, Leorey N. Saligan, Angela Starkweather, Colleen Jackson-Cook, Luana Colloca, Susan G. Dorsey, Jessica Gill
Publikováno v:
PLoS ONE, Vol 14, Iss 5, p e0216539 (2019)
The mechanisms underlying the transition from acute to chronic pain remain unclear. Here, we sought to characterize the transcriptome associated with chronic low back pain as well as the transcriptome of the transition from acute to chronic low back
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffcae82d91ea2a1409721ab75dc9af52
https://europepmc.org/articles/PMC6522025/
https://europepmc.org/articles/PMC6522025/
Autor:
Anup Mahurkar, Theresa K Hodges, Barbara J. Smith, Li Pan, Bishal Tandukar, Ferenc Livak, Sandeep S. Joshi, Thomas J. Hornyak, Jennifer M. Huang
Publikováno v:
PLoS genetics. 15(4)
Melanocyte stem cells (McSCs) are the undifferentiated melanocytic cells of the mammalian hair follicle (HF) responsible for recurrent generation of a large number of differentiated melanocytes during each HF cycle. HF McSCs reside in both the CD34+
Autor:
Victor Felix, Jayaram Kancherla, Héctor Corrada Bravo, Justin Wagner, Anup Mahurkar, Domenick J. Braccia, James Matsumara, Jonathan Crabtree
Publikováno v:
F1000Research
The rich data produced by the second phase of the Human Microbiome Project (iHMP) offers a unique opportunity to test hypotheses that interactions between microbial communities and a human host might impact an individual’s health or disease status.
Autor:
Joana C. Silva, David A. Rasko, Kelly M. Robinson, Ricky S. Adkins, Lisa Sadzewicz, Aziah S. Hawkins, Anup Mahurkar, Sushma Nagaraj, Julie C. Dunning Hotopp, Amol C. Shetty, Claire M. Fraser, Luke J. Tallon, Ivette Santana-Cruz
Publikováno v:
Microbial Genomics
doi: 10.1099/mgen.0.000122.001. As sequencing technologies have evolved, the tools to analyze these sequences have made similar advances. However, for multi-species samples, we observed important and adverse differences in alignment specificity and c
Autor:
Bing Ma, Jacques Ravel, Irina Andreyeva, Anne-Maria Fiorino, Patricia L. Hibberd, Arthur Brady, Anup Mahurkar, Emiley A. Eloe-Fadrosh, Miriam Haverkamp, Jonathan Crabtree, Claire M. Fraser, Elliott F. Drabek, Christine Botelho
Publikováno v:
mBio
mBio, Vol 6, Iss 2 (2015)
mBio, Vol 6, Iss 2 (2015)
A mechanistic understanding of the purported health benefits conferred by consumption of probiotic bacteria has been limited by our knowledge of the resident gut microbiota and its interaction with the host. Here, we detail the impact of a single-org