Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Henrik Hasman"'
Autor:
Karina Lauenborg Møller, Brian Kristensen, Ulrik Stenz Justesen, Bent Røder, Henrik Hasman, Anne Kjerulf, Claus Østergaard, Hülya Kaya, Anette M. Hammerum, Turid Snekloth Søndergaard, Barbara Juliane Holzknecht, Louise Roer, Anna Emilie Henius, Mikala Wang, Lone Jannok Porsbo, Frank Hansen, Philip Kjettinge Thomsen, Lillian Marie Søes
Publikováno v:
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Eurosurveillance, vol. 25, no. 18, 1900742, pp. 1-9 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, vol. 25, no. 18, pii=1900742 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Eurosurveillance, vol. 25, no. 18 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Eurosurveillance, vol. 25, no. 18, pp. 1-9 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, vol. 25, no. 18, pii=1900742 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Eurosurveillance, vol. 25, no. 18 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Hammerum, A M, Porsbo, L J, Hansen, F, Roer, L, Kaya, H, Henius, A, Møller, K L, Justesen, U S, Søes, L, Røder, B L, Thomsen, P K, Wang, M, Søndergaard, T S, Holzknecht, B J, Østergaard, C, Kjerulf, A, Kristensen, B & Hasman, H 2020, ' Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 ', Eurosurveillance, vol. 25, no. 18, pp. 1-9 . https://doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
Background Carbapenemase-producing Escherichia coli are increasing worldwide. In recent years, an increase in OXA-244-producing E. coli isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark. Aim Molecular
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36d4ccd8a2b0b77b08f85f1494fcac8a
https://vbn.aau.dk/da/publications/739918bd-7ab2-48ab-adbb-f02fb9f42603
https://vbn.aau.dk/da/publications/739918bd-7ab2-48ab-adbb-f02fb9f42603
Autor:
Stefanie P. Glaeser, Kurt Fuursted, David Fuglsang-Damgaard, Søren Overballe-Petersen, Frank Hansen, Anette M. Hammerum, Henrik Hasman, Jochen Blom, Peter Kämpfer
Publikováno v:
Kämpfer, P, Fuglsang-Damgaard, D, Overballe-Petersen, S, Hasman, H, Hammerum, A M, Fuursted, K, Blom, J, Glaeser, S P & Hansen, F 2020, ' Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing : Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov ', International Journal of Systematic and Evolutionary Microbiology, vol. 70, no. 2, pp. 1315–1320 . https://doi.org/10.1099/ijsem.0.003918
The taxonomic status of all Pseudocitrobacter species was re-evaluated by comparative genomics based on whole genome sequencing. As a result, it is obvious that Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis .
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1716438515513af1cc0914dcc5722d47
https://vbn.aau.dk/da/publications/9ef929e7-f473-4dda-8757-9f33d212a504
https://vbn.aau.dk/da/publications/9ef929e7-f473-4dda-8757-9f33d212a504
Autor:
Henrik Hasman, Alessandra Carattoli
Publikováno v:
Horizontal Gene Transfer ISBN: 9781493998760
PlasmidFinder and in silico plasmid multiLocus sequence typing (pMLST) are two easy-to-use web tools for detection and characterization of plasmid sequences in whole-genome sequencing (WGS) data from Enterobacteriaceae. These tools have been adopted
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9299d1344e6353c93aa8f7e77eac04fe
https://doi.org/10.1007/978-1-4939-9877-7_20
https://doi.org/10.1007/978-1-4939-9877-7_20
Autor:
Louise Roer, Henrik Hasman, Johanne Ahrenfeldt, Martin Christen Frølund Thomsen, Anette M. Hammerum, Evgeni V. Sokurenko, Frank Hansen, Ole Lund, Mariya Muradova, Rosa Lundbye Allesøe, Sujay Chattopadhyay, Veronika Tchesnokova
Publikováno v:
Journal of Clinical Microbiology. 55:2538-2543
The aim of this study was to construct a valid publicly available method for in silico fimH subtyping of Escherichia coli particularly suitable for differentiation of fine-resolution subgroups within clonal groups defined by standard multilocus seque
Autor:
Anette M. Hammerum, Niels Frimodt-Møller, Mikala Wang, Henrik Hasman, Ole Lund, Hülya Kaya, Barbara Juliane Holzknecht, Philip Thomas Lanken Conradsen Clausen, Jenny Dahl Knudsen, Jurgita Samulioniené, Bent Røder, Frank Hansen
Publikováno v:
Hasman, H, Clausen, P T L C, Kaya, H, Hansen, F, Knudsen, J D, Wang, M, Holzknecht, B J, Samulioniené, J, Røder, B L, Frimodt-Møller, N, Lund, O & Hammerum, A M 2019, ' LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences ', Journal of Antimicrobial Chemotherapy, vol. 74, no. 6, pp. 1473-1476 . https://doi.org/10.1093/jac/dkz092
Hasman, H, Clausen, P T L C, Kaya, H, Hansen, F, Knudsen, J D, Wang, M, Holzknecht, B J, Samulioniené, J, Røder, B L, Frimodt-Møller, N, Lund, O & Hammerum, A M 2019, ' LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences ', Journal of Antimicrobial Chemotherapy, vol. 74, no. 6, dkz092, pp. 1473-1476 . https://doi.org/10.1093/jac/dkz092
Hasman, H, Clausen, P T L C, Kaya, H, Hansen, F, Knudsen, J D, Wang, M, Holzknecht, B J, Samulioniené, J, Røder, B L, Frimodt-Møller, N, Lund, O & Hammerum, A M 2019, ' LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences ', Journal of Antimicrobial Chemotherapy, vol. 74, no. 6, dkz092, pp. 1473-1476 . https://doi.org/10.1093/jac/dkz092
OBJECTIVES: In enterococci, resistance to linezolid is often mediated by mutations in the V domain of the 23S rRNA gene (G2576T or G2505A). Furthermore, four genes [optrA, cfr, cfr(B) and poxtA] encode linezolid resistance in enterococci. We aimed to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2972fd8fd8b945293cf0937882548db
https://pure.au.dk/portal/da/publications/lrefinder-a-web-tool-for-detection-of-the-23s-rrna-mutations-and-the-optra-cfr-cfrb-and-poxta-genes-encoding-linezolid-resistance-in-enterococci-from-wholegenome-sequences(3d19f9a7-b22d-4233-8b19-4755d568d005).html
https://pure.au.dk/portal/da/publications/lrefinder-a-web-tool-for-detection-of-the-23s-rrna-mutations-and-the-optra-cfr-cfrb-and-poxta-genes-encoding-linezolid-resistance-in-enterococci-from-wholegenome-sequences(3d19f9a7-b22d-4233-8b19-4755d568d005).html
Autor:
Henrik Hasman, Mikala Wang, Karina Lauenborg Møller, Barbara Juliane Holzknecht, Louise Roer, Esad Dzajic, Turid Snekloth Søndergaard, David Fulgsang-Damgaard, Bent Røder, Frank Hansen, Anette M. Hammerum, Anna Emilie Henius, Lillian Marie Søes, Caroline A S Lauridsen, Ulrik Stenz Justesen, Sanne L Blem, Leif P. Andersen, Claus Østergaard, Lone Jannok Porsbo
Publikováno v:
Hammerum, A M, Lauridsen, C A S, Blem, S L, Roer, L, Hansen, F, Henius, A E, Holzknecht, B J, Søes, L, Andersen, L P, Røder, B L, Justesen, U S, Østergaard, C, Søndergaard, T, Dzajic, E, Wang, M, Fulgsang-Damgaard, D, Møller, K L, Porsbo, L J & Hasman, H 2020, ' Investigation of possible clonal transmission of carbapenemase-producing Klebsiella pneumoniae complex member isolates in Denmark using core genome MLST and National Patient Registry Data ', International Journal of Antimicrobial Agents, vol. 55, no. 5, 105931 . https://doi.org/10.1016/j.ijantimicag.2020.105931
Objectives: The aim of this study was to identify clonally-related carbapenemase-producing Klebsiella pneumoniae complex members that could be involved in outbreaks among hospitalized patients in Denmark, and to identify possible epidemiological link
Autor:
Louise Roer, Thor Bech Johannesen, Joël Mossong, Dennis S. Hansen, Valeria Bortolaia, Henrik Hasman, Marc Stegger, Rene S. Hendriksen, Pierre Wattiau, Pimlapas Leekitcharoenphon, Søren Overballe-Petersen, Anne Mette Seyfarth, Anette M. Hammerum, Helle Korsgaard, Frank Hansen, Cécile Boland
Publikováno v:
The Journal of antimicrobial chemotherapy. 74(3)
Objectives This study compares the genome of an ST131 CMY-2-producing Escherichia coli isolate from a Danish patient with other ST131 CMY-2-producing E. coli isolates of both human and animal origin. Methods In 2016, an ST131 CMY-2-producing E. coli
Autor:
Ulrik Stenz Justesen, Henrik Hasman, Frank Hansen, Marc Stegger, Louise Roer, Kim Lee Ng, Anette M. Hammerum, Søren Overballe-Petersen, Leif P. Andersen
Publikováno v:
Genome Announcements. 6
Using Nanopore sequencing, we describe here the circular genome of an Escherichia coli sequence type 410 (ST410) strain with five closed plasmids. A large 111-kb incompatibility group F (IncF) plasmid harbored bla NDM-5 and 16 other resistance genes.
Publikováno v:
Thomsen, M C F, Hasman, H, Westh, H, Kaya, H & Lund, O 2017, ' RUCS : rapid identification of PCR primers for unique core sequences ', Bioinformatics, vol. 33, no. 24, pp. 3917-3921 . https://doi.org/10.1093/bioinformatics/btx526
Bioinformatics
Thomsen, M C F, Hasman, H, Westh, H, Kaya, H & Lund, O 2017, ' RUCS: Rapid identification of PCR primers for unique core sequences ', Bioinformatics, vol. 33, no. 24, pp. 3917-3921 . https://doi.org/10.1093/bioinformatics/btx526
BASE-Bielefeld Academic Search Engine
Bioinformatics
Thomsen, M C F, Hasman, H, Westh, H, Kaya, H & Lund, O 2017, ' RUCS: Rapid identification of PCR primers for unique core sequences ', Bioinformatics, vol. 33, no. 24, pp. 3917-3921 . https://doi.org/10.1093/bioinformatics/btx526
BASE-Bielefeld Academic Search Engine
Motivation Designing PCR primers to target a specific selection of whole genome sequenced strains can be a long, arduous and sometimes impractical task. Such tasks would benefit greatly from an automated tool to both identify unique targets, and to v
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c049c155735dbd79e8ef1ec1b124f295
https://curis.ku.dk/portal/da/publications/rucs(0aee890f-6410-4161-975d-15a07baadcdd).html
https://curis.ku.dk/portal/da/publications/rucs(0aee890f-6410-4161-975d-15a07baadcdd).html
Autor:
Louise Roer, Rene S. Hendriksen, Pimlapas Leekitcharoenphon, Oksana Lukjancenko, Rolf Sommer Kaas, Henrik Hasman, Frank M. Aarestrup, Jonathan Eisen
Publikováno v:
mSystems, Vol 1, Iss 3, p e00009-16 (2016)
BASE-Bielefeld Academic Search Engine
Roer, L, Hendriksen, R S, Leekitcharoenphon, P, Lukjancenko, O, Kaas, R S, Hasman, H & Aarestrup, F M 2016, ' Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? ', mSystems, vol. 1, no. 3, e00009-16 . https://doi.org/10.1128/mSystems.00009-16
mSystems
mSystems, Vol 1, Iss 3 (2016)
BASE-Bielefeld Academic Search Engine
Roer, L, Hendriksen, R S, Leekitcharoenphon, P, Lukjancenko, O, Kaas, R S, Hasman, H & Aarestrup, F M 2016, ' Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? ', mSystems, vol. 1, no. 3, e00009-16 . https://doi.org/10.1128/mSystems.00009-16
mSystems
mSystems, Vol 1, Iss 3 (2016)
The evolution of bacterial pathogens, their plasticity and ability to rapidly change and adapt to new surroundings are crucial for understanding the epidemiology and public health. With the application of genomics, it became clear that horizontal gen