Zobrazeno 1 - 10
of 20
pro vyhledávání: '"John M. Hickey"'
Publikováno v:
Crop Science
Gonen, S, Wimmer, V, Gaynor, C, Byrne, E, Gorjanc, G & Hickey, J 2021, ' Phasing and imputation of single nucleotide polymorphism data of missing parents of bi-parental plant populations ', Crop science, vol. 61, no. 4, pp. 2243-2253 . https://doi.org/10.1002/csc2.20409
Gonen, S, Wimmer, V, Gaynor, C, Byrne, E, Gorjanc, G & Hickey, J 2021, ' Phasing and imputation of single nucleotide polymorphism data of missing parents of bi-parental plant populations ', Crop science, vol. 61, no. 4, pp. 2243-2253 . https://doi.org/10.1002/csc2.20409
This paper presents an extension to a heuristic method for phasing and imputation of genotypes of descendants in biparental populations so that it can phase and impute genotypes of parents that are ungenotyped or partially genotyped. The imputed geno
Autor:
Sudam C. Patil, Diego Jarquin, John M. Hickey, T. Radhakrishnan, Subramaniam Sundravadana, Ramesh S. Bhat, Sunil Chaudhari, Dhirendra Khare, Rajeev K. Varshney, Manish K. Pandey, José Crossa, Pasupuleti Janila
Publikováno v:
TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik
Pandey, M K, Chaudhari, S, Jarquin, D, Janila, P, Crossa, J, Patil, S C, Sundravadana, S, Khare, D, Bhat, R S, Radhakrishnan, T, Hickey, J M & Varshney, R K 2020, ' Genome-based trait prediction in multi- environment breeding trials in groundnut ', TAG Theoretical and Applied Genetics . https://doi.org/10.1007/s00122-020-03658-1
Pandey, M K, Chaudhari, S, Jarquin, D, Janila, P, Crossa, J, Patil, S C, Sundravadana, S, Khare, D, Bhat, R S, Radhakrishnan, T, Hickey, J M & Varshney, R K 2020, ' Genome-based trait prediction in multi- environment breeding trials in groundnut ', TAG Theoretical and Applied Genetics . https://doi.org/10.1007/s00122-020-03658-1
Key message Comparative assessment identified naïve interaction model, and naïve and informed interaction GS models suitable for achieving higher prediction accuracy in groundnut keeping in mind the high genotype × environment interaction for comp
Autor:
Jon Bančič, Christian R. Werner, R. Chris Gaynor, Gregor Gorjanc, Damaris A. Odeny, Henry F. Ojulong, Ian K. Dawson, Stephen P. Hoad, John M. Hickey
Publikováno v:
Bančič, J, Werner, C, Gaynor, C, Gorjanc, G, Odeny, D A, Ojulong, H, Dawson, I, Hoad, S P & Hickey, J 2021, ' Modelling illustrates that genomic selection provides new opportunities for intercrop breeding ', Frontiers in plant science, vol. 12, 605172 . https://doi.org/10.3389/fpls.2021.605172
Frontiers in Plant Science, Vol 12 (2021)
Frontiers in Plant Science
Frontiers in Plant Science, Vol 12 (2021)
Frontiers in Plant Science
Intercrop breeding programs using genomic selection can produce faster genetic gain than intercrop breeding programs using phenotypic selection. Intercropping is an agricultural practice in which two or more component crops are grown together. It can
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30b1f6141b0575eb205d6d4f7e6a8c9d
https://hdl.handle.net/20.500.11820/e75ca887-c70c-4f8d-87e2-383a141362d4
https://hdl.handle.net/20.500.11820/e75ca887-c70c-4f8d-87e2-383a141362d4
Publikováno v:
Biotechnology Advances
Jin, Y H, Robledo, D, Hickey, J, McGrew, M & Houston, R 2021, ' Surrogate broodstock to enhance biotechnology research and applications in aquaculture ', Biotechnology Advances, vol. 49, 107756 . https://doi.org/10.1016/j.biotechadv.2021.107756
Jin, Y H, Robledo, D, Hickey, J, McGrew, M & Houston, R 2021, ' Surrogate broodstock to enhance biotechnology research and applications in aquaculture ', Biotechnology Advances, vol. 49, 107756 . https://doi.org/10.1016/j.biotechadv.2021.107756
Aquaculture is playing an increasingly important role in meeting global demands for seafood, particularly in low and middle income countries. Genetic improvement of aquaculture species has major untapped potential to help achieve this, with selective
Autor:
Janez Jenko, Steve Thorn, John M. Hickey, David C. Wilson, Gregor Gorjanc, Daniel Money, Andrew Whalen
Publikováno v:
Genetics Selection Evolution
Genetics Selection Evolution, BioMed Central, 2020, 52 (1), pp.38. ⟨10.1186/s12711-020-00558-2⟩
Money, D, Wilson, D, Jenko, J, Whalen, A, Thorn, S, Gorjanc, G & Hickey, J M 2020, ' Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets ', Genetics Selection Evolution, vol. 52, no. 1, pp. 38 . https://doi.org/10.1186/s12711-020-00558-2
Genetics, Selection, Evolution : GSE
Genetics Selection Evolution, Vol 52, Iss 1, Pp 1-12 (2020)
Genetics Selection Evolution, BioMed Central, 2020, 52 (1), pp.38. ⟨10.1186/s12711-020-00558-2⟩
Money, D, Wilson, D, Jenko, J, Whalen, A, Thorn, S, Gorjanc, G & Hickey, J M 2020, ' Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets ', Genetics Selection Evolution, vol. 52, no. 1, pp. 38 . https://doi.org/10.1186/s12711-020-00558-2
Genetics, Selection, Evolution : GSE
Genetics Selection Evolution, Vol 52, Iss 1, Pp 1-12 (2020)
BACKGROUND: We describe the latest improvements to the long-range phasing (LRP) and haplotype library imputation (HLI) algorithms for successful phasing of both datasets with one million individuals and datasets genotyped using different sets of sing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb3c5266a64569ab08c81a7a4c888fb4
https://hal.archives-ouvertes.fr/hal-02897831/document
https://hal.archives-ouvertes.fr/hal-02897831/document
Publikováno v:
Gaynor, C, Gorjanc, G & Hickey, J 2021, ' AlphaSimR: An R-package for Breeding Program Simulations ', G3: Genes | Genomes | Genetics . https://doi.org/10.1093/g3journal/jkaa017
G3: Genes|Genomes|Genetics
G3: Genes|Genomes|Genetics
This paper introduces AlphaSimR, an R package for stochastic simulations of plant and animal breeding programs. AlphaSimR is a highly flexible software package able to simulate a wide range of plant and animal breeding programs for diploid and autopo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::52ad8ac04b43324f3f96cdf398f5e414
https://doi.org/10.1101/2020.08.10.245167
https://doi.org/10.1101/2020.08.10.245167
Autor:
Roberto Antolin, Owen Powell, Wallace Cowling, Stefan M Edwards, R. Chris Gaynor, Gregor Gorjanc, John M. Hickey
Publikováno v:
Cowling, W A, Gaynor, R C, Antolín, R, Gorjanc, G, Edwards, S M, Powell, O & Hickey, J M 2020, ' In silico simulation of future hybrid performance to evaluate heterotic pool formation in a self-pollinating crop ', Scientific Reports, vol. 10, no. 1, pp. 4037 . https://doi.org/10.1038/s41598-020-61031-0
Scientific Reports, Vol 10, Iss 1, Pp 1-8 (2020)
Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-8 (2020)
Scientific Reports
Hybrid vigour has the potential to substantially increase the yield of self-pollinating crops such as wheat and rice, but future hybrid performance may depend on the initial strategy to form heterotic pools. We used in silico stochastic simulation of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::05b2beb79c4c49e7a1e5ba2b86b89120
https://hdl.handle.net/20.500.11820/d07dd813-cc2c-43b0-96a6-e9717a1770c3
https://hdl.handle.net/20.500.11820/d07dd813-cc2c-43b0-96a6-e9717a1770c3
In this paper we develop and test a method which uses high-throughput phenotypes to infer the genotypes of an individual. The inferred genotypes can then be used to perform genomic selection. Previous methods which used high-throughput phenotype data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5447ea6bc3f1162cb4121828cb396ec2
https://doi.org/10.1101/2020.02.28.969600
https://doi.org/10.1101/2020.02.28.969600
Autor:
M. Lourdes Velez-Suberbie, Daniel G. Bracewell, John M. Hickey, David B. Volkin, Stephen A. Morris, Tarit Mukhopadhyay, Kawaljit Kaur, Sangeeta B. Joshi
Publikováno v:
Biotechnology Progress
To meet the challenges of global health, vaccine design and development must be reconsidered to achieve cost of goods as low as 15¢ per dose. A new recombinant protein‐based rotavirus vaccine candidate derived from non‐replicative viral subunits
Publikováno v:
Advances in Animal Biosciences. 8:383-387
Precision farming advances are providing opportunities in both production agriculture and agricultural research. For growers and agronomists, the benefits of identifying where crops are stressed, the location of weeds and estimating yields on a large