Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Yajima, Shunsuke"'
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 5:Distribution of the size of indels. We identified 284,007 insertions (positive values) and 345,249 deletions (negative values). (PDF 29 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74d6d700edbfc4ff5888ad1eb1ced091
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 7:GO terms which were over-represented in nsSNP-containing genes. (DOC 42 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5c92fe53568d3cdc70458a15ea4a3113
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46cb7558ed0ee4f68226237f1051becf
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 10:List of species examined in this study. (DOC 48 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad2df07bd744ffaf7c09157ca2fd44a2
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 4:SNP distribution on each chromosome. SNP density (SNPs per 1 kbp) is plotted by physical position. Relative length of the chromosomes was correlated with the length of each chromosome without repeat regions. (PDF 149 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ebe27f78f670086e8e961cf48e58ab0
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 9:The number of SNPs and indels with various filters. Detected SNPs and indels were filtered with additional filters and the number of homozygous and heterozygous SNPs and indels was compared. Parameters for the filters were (1) Depth
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d913e821acaae0163cfe6cbfd08a62ea
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 3:The number of identified SNPs and indels for each chromosome. SNPs are shown in the blue columns, and indels are shown in the red columns. Length of chromosomes is indicated by the green line. (PDF 72 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b16a36539770850de98cab2d3348b83
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 11:Summary of the genes sequenced for the phylogenetic reconstruction. List of the genes and their accession numbers which were used for the phylogenetic analysis. (DOC 39 KB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::05fa866753c87af10785e1fac8d8a5c3
Autor:
Ryouka Kawahara-Miki, Tsuda, Kaoru, Yuh Shiwa, Arai-Kichise, Yuko, Matsumoto, Takashi, Kanesaki, Yu, Sen-Ichi Oda, Shizufumi Ebihara, Yajima, Shunsuke, Yoshikawa, Hirofumi, Kono, Tomohiro
Additional file 1:Reads for all chromosomes of repeat masked and unmasked genome assembly. In each chromosome, left columns show the reads mapped to the assembly without repeat masking and right columns show those to the repeat-masked assembly. Among
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2614d086eb6c43b7c13084d789b060e2