Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Richard M. Myers"'
Autor:
Jay Shendure, Gregory M. Cooper, Bryan A. Moyers, Vikram Agarwal, E. Christopher Partridge, Brian S. Roberts, Richard M. Myers, Kimberly M. Newberry, Beth Martin
Publikováno v:
Genome Res
Massively parallel reporter assays (MPRAs) are useful tools to characterize regulatory elements in human genomes. An aspect of MPRAs that is not typically the focus of analysis is their intrinsic ability to differentiate activity levels for a given s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b71742fba23720e37c40f3a79fe2dda
https://europepmc.org/articles/PMC8092006/
https://europepmc.org/articles/PMC8092006/
Autor:
Sophia B. Smith, Eric M. Mendenhall, Sarah Meadows, Richard M. Myers, Brian S. Roberts, E. Christopher Partridge, Mark Mackiewicz, Kimberly M. Newberry, Daniel Savic
Chromatin immunoprecipitation followed by next-generation DNA sequencing (ChIP-seq) is a widely used technique for identifying transcription factor (TF) binding events throughout an entire genome. However, ChIP-seq is limited by the availability of s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ba11e7ade1b679ca3d34b8917e958be
https://europepmc.org/articles/PMC4579343/
https://europepmc.org/articles/PMC4579343/
Autor:
Youngsook L. Jung, Marc D. Perry, Michael M. Hoffman, Joel Rozowsky, Florencia Pauli, Tao Liu, Matthew Slattery, Yiwen Chen, Qiang Li, Michael Snyder, Debasish Raha, Noam Shoresh, Anshul Kundaje, Katherine I. Fisher-Aylor, Gilberto DeSalvo, John A. Stamatoyannopoulos, Charles B. Epstein, Arend Sidow, Jason Gertz, Stephen G. Landt, Pouya Kheradpour, X. Shirley Liu, Manolis Kellis, Peggy J. Farnham, Ghia Euskirchen, Peter V. Kharchenko, Michael Y. Tolstorukov, Lijia Ma, Jason D. Lieb, Subhradip Karmakar, Aleksandar Milosavljevic, James B. Brown, Mark Gerstein, Philip Cayting, Timothy E. Reddy, Richard M. Myers, Peter J. Bickel, Alexander J. Hartemink, Michael J. Pazin, Peter J. Park, Barbara J. Wold, Kevin P. White, Georgi K. Marinov, Bradley E. Bernstein, Vishwanath R. Iyer, Simon Xi, Serafim Batzoglou
Publikováno v:
Genome Research
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq) has become a valuable and widely used approach for mapping the genomic location of transcription-factor binding and histone modifications in living cells. Desp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5616e0d5640a45f356b2f95f7da55246
https://resolver.caltech.edu/CaltechAUTHORS:20120927-133114530
https://resolver.caltech.edu/CaltechAUTHORS:20120927-133114530
Autor:
Michelle Moksa, Ralf Wagner, David Haussler, Michael Stevens, Marco A. Marra, Chenwei Lin, Bonnie L. Maidak, Laura Langton, Janet Weber, Michael R. Brent, Sun Lu, Howard J. Jacob, Charles L.G. Comstock, Terence Murphy, Elise A. Feingold, Brona Brejova, Diana Mah, Dominic Esposito, Chaochun Wei, Carolyn M. Shenmen, Kevin Ma, Stephanie Lee, Richard M. Myers, Francis S. Collins, Rachel A. Harte, Catherine M. Farrell, Jeremy Schmutz, Keith Fichter, Richard A. Gibbs, Preethi H. Gunaratne, Cristen Robinson, Lon Phan, Rebekah S. Rasooly, Jacqueline C. Pulido, Alice C. Young, Shuwei Yang, Jane Grimwood, Peter J. Good, Robert Baertsch, Michael Mayo, Troy Moore, Elizabeth Pardes, Michael J. Brownstein, Wonhee Jang, Linda Yankie, Lila Ghamsari, Gary F. Temple, Praveen Sethupathy, Steven J.M. Jones, Martin Hirst, Wendy Wu, Athena Deng, Adam Siepel, Christa Pennacchio, Mark Dickson, Mark R. Smith, Alex Astashyn, Kourosh Salehi-Ashtiani, Jeanne Lewis, Sarah Munro, Kenneth H. Buetow, Nicole Shapiro, Carl F. Schaefer, Elizabeth Mello, Merinda Deng, Chris E. Gruber, Mark Diekhans, Anita Lebeau, Stephanie Sieja, Stefan Wiemann, Donna Maglott, Ming Ward, Jim Kent, Susan Wagner, Narayan K. Bhat, Leonie Misquitta, Tom I. Bonner, Eric D. Green, Robert A. Holt, Michael R. Murphy, Greg Taylor, Angela M. Garcia, Joseph Lazar, James Hartigan, Garth Brown, Johnson Pang, Jeffrey G. Derge, Mike Muratet, Lukas Wagner, Kane Tse, Allison Mandich, Robert W. Blakesley, Osamu Ohara, Jennifer Hart, Daniela S. Gerhard, Richard A. Moore, John Douglas Mcpherson, Jing Wang, Debonny Shoaf, Bhanu Rajput, Kim D. Pruitt, Jia Qian Wu, Stanley Letovksy, Anne Go, Lillian D. Riddick, James R. Hudson, Ryan R. Murray, Donna M. Muzny, Vanessa Wall, Gerard G. Bouffard, Thomas Zeng, Alex Rodriguez, Melissa J. Landrum, Keith Robison, Eric Chuah, Jim C. Mullikin, Kirsten Schreiber, James L. Hartley, Ralph F. Hopkins, Marcus Graf, Ryan D. Morin, Amber Marsh, David Webb, Marijke J. van Baren, Blake A. Simmons, Malachi Griffith, David Kloske
Since its start, the Mammalian Gene Collection (MGC) has sought to provide at least one full-protein-coding sequence cDNA clone for every human and mouse gene with a RefSeq transcript, and at least 6200 rat genes. The MGC cloning effort initially rel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26ace1c72d109f76c3bec0e9d4313431
https://europepmc.org/articles/PMC2792178/
https://europepmc.org/articles/PMC2792178/
Autor:
X. Shirley Liu, Philipp Kapranov, David Hawkins, D. Benjamin Gordon, Jayati Ghosh, Christoph M. Koch, Paul Flicek, Zhiping Weng, Alexander Karpikov, Jason D. Lieb, Nan Jiang, Richard M. Myers, Loan Nguyen, Xinmin Zhang, Xiaoqin Xu, David S. Johnson, Elizabeth Anton, David A. Nix, Peter C. Scacheri, Jason S. Carroll, Scott McCuine, Heather A. Hirsch, Zarmik Moqtaderi, Mark Gerstein, Zhen Ye, Yutao Fu, Wei Li, Keith A. Ching, Joel Rozowsky, Nathan D. Trinklein, Roland Green, Bo Curry, Hennady P. Shulha, Michael Snyder, Leonardo Brizuela, Kevin Struhl, Annie Yang, Sherman M. Weissman, Mark Bieda, Bing Ren, Arindam Bhattacharjee, H. Holster, Ghia Euskirchen, Jun S. Song, Peggy J. Farnham, Thomas R. Gingeras, Ian Dunham, Myles Brown
The most widely used method for detecting genome-wide protein–DNA interactions is chromatin immunoprecipitation on tiling microarrays, commonly known as ChIP-chip. Here, we conducted the first objective analysis of tiling array platforms, amplifica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c495be6883baedda9b3bbb59dd6bfe41
https://europepmc.org/articles/PMC2259103/
https://europepmc.org/articles/PMC2259103/
Autor:
Yutao Fu, Hualin Xi, Nathan D. Trinklein, Richard M. Myers, Jane M. Lin, Patrick J. Collins, Zhiping Weng
Bidirectional promoters have received considerable attention because of their ability to regulate two downstream genes (divergent genes). They are also highly abundant, directing the transcription of ∼11% of genes in the human genome. We categorize
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d2baf34a2b3240ed150a10c622865eb
https://europepmc.org/articles/PMC1891341/
https://europepmc.org/articles/PMC1891341/
Autor:
Barbara J. Wold, Richard M. Myers, Evonne Chen Leeper Thompson, Ali Mortazavi, Sarah T. Garcia
We constructed and applied an open source informatic framework called Cistematic in an effort to predict the target gene repertoire for transcription factors with large binding sites. Cistematic uses two different evolutionary conservation-filtering
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b0ff393e0df2ce4bc7ee34bc88e888d5
https://europepmc.org/articles/PMC1581430/
https://europepmc.org/articles/PMC1581430/
Autor:
Yutaka Suzuki, Stephanie Rodrigues, Francis S. Collins, Agnes Baross, Jane Grimwood, Anna Sneed, Anuradha Madan, Sinnakaruppan Mathavan, Nicole Shapiro, Peggy N. Kwong, Martin Krzywinski, Chia-Lin Wei, Susan Old, Michael R. Brent, Jeff M. Stott, Jim Kent, Robert W. Blakesly, Steven J. Granite, Yaron S.N. Butterfield, Shiraki Toshiyuki, Jessica Fahey, Steven J.M. Jones, Eric D. Green, Jeffery G. Derge, Kirsten Schreiber, Todd E. Scheetz, Anup Madan, C. E. Gruber, Mark Ketteman, Sumio Sugano, Blake A. Simmons, Kathryn A. Makowski, Richard M. Myers, Michael J. Brownstein, David Haussler, Narayan K. Bhat, Minoru S.H. Ko, Thomas L. Casavant, Anca Petrescu, Eduardo Lee, Angela M. Garcia, Obi L. Griffith, David J. Lipman, Terry Furey, Peter J. Good, Koichi Kawakami, Ye Yuan, Jia Qian Wu, Keith Wetherby, Allison M. Peck, Angelique Schnerch, Piero Carninci, Robert A. Holt, Diana L. Palmquist, Amy Sanchez, Stephen L. Johnson, Maria de Fatima Bonaldo, Ursula Skalska, John Douglas Mcpherson, Michelle Whiting, Charles P. Brinkley, Alice C. Young, Elise A. Feingold, Dawood B. Dudekula, M. R. Smith, Joel A. Malek, Christa Prange, Jeremy Schmutz, Wonhee Jang, Richard A. Gibbs, Stephanie Bosak, Alex Rodriguez, Lukas Wagner, Yulan Piao, Mike Feolo, Leonie Misquitta, Donna M. Muzny, Mark S. Guyer, Tom I. Bonner, Florence Hsie, Rebekah S. Rasooly, Nancy Y. Liao, Preethi H. Gunaratne, Malachi Griffith, Troy Moore, Erin Helton, Daniela S. Gerhard, Richard C. Waterman, Ralph F. Hopkins, Kirill Rotmistrovsky, Mark Diekhans, Edwin Fuh, Greg Schuler, Carl F. Schaefer, Anne Hodgson, Gerard G. Bouffard, Sandra W. Clifton, Mark Dickson, Lynette H. Grouse, Tom Driscoll, Stephen W. Hulyk, Susan F. Greenhut, Carolyn M. Shenmen, Steven L. Klein, Duane E. Smailus, Yijun Ruan, Ted B. Usdin, Jacqueline E. Schein, Marco A. Marra, Ryan Morrin, M. Bento Soares, Steven Sherry, Russell L. Pearson, Carla Kowis, Kenneth H. Buetow
The National Institutes of Health's Mammalian Gene Collection (MGC) project was designed to generate and sequence a publicly accessible cDNA resource containing a complete open reading frame (ORF) for every human and mouse gene. The project initially
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a195c00230287a0151192e53b5ca959
https://europepmc.org/articles/PMC528928/
https://europepmc.org/articles/PMC528928/
The synaptic cell adhesion molecules encoded by the protocadherin gene cluster are hypothesized to provide a molecular code involved in the generation of synaptic complexity in the developing brain. Variation in copy number and sequence content of pr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d2c26de4ff2ea50c8c24dc7ea15f8bb6
https://europepmc.org/articles/PMC353213/
https://europepmc.org/articles/PMC353213/
Autor:
Theresa Zhang, Michael Q. Zhang, James P. Noonan, Tom Maniatis, Jeremy Schmutz, Jan Fang Cheng, Mark Dickson, Jane Grimwood, Youngwook Kim, Qiang Wu, Richard M. Myers
The genomic organization of the human protocadherin α, β, and γ gene clusters (designated Pcdhα [gene symbol PCDHA], Pcdhβ [PCDHB], and Pcdhγ [PCDHG]) is remarkably similar to that of immunoglobulin and T-cell receptor genes. The extracellular
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::277b62fb2e7581c8a7a5329bb8bf4b06
https://europepmc.org/articles/PMC311048/
https://europepmc.org/articles/PMC311048/