Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Anup Mahurkar"'
Autor:
Amol Carl Shetty, John Sivinski, Jessica Cornell, Lisa Sadzewicz, Anup Mahurkar, Xing-Qun Wang, Luana Colloca, Weihong Lin, Maureen A. Kane, Chamindi Seneviratne
Publikováno v:
medRxiv
Molecular changes associated with alcohol consumption arise from complex interactions between pharmacological effects of alcohol, psychological/placebo context surrounding drinking, and other environmental and biological factors. The goal of this stu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2dd3c793fe6acdf7678319206d9f6290
https://europepmc.org/articles/PMC10055573/
https://europepmc.org/articles/PMC10055573/
Autor:
Yichen Wang, Irzam Sarfraz, Wei Kheng Teh, Artem Sokolov, Brian R. Herb, Heather H. Creasy, Isaac Virshup, Ruben Dries, Kylee Degatano, Anup Mahurkar, Daniel J. Schnell, Pedro Madrigal, Jason Hilton, Nils Gehlenborg, Timothy Tickle, Joshua D. Campbell
A large number of genomic and imaging datasets are being produced by consortia that seek to characterize healthy and disease tissues at single-cell resolution. While much effort has been devoted to capturing information related to biospecimen informa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::39a8cfed4bf78e4af8755d1c01e65f66
https://doi.org/10.1101/2023.03.06.531314
https://doi.org/10.1101/2023.03.06.531314
Autor:
Diane M. Terry, Scott E. Devine, Charles C. Hong, Nelson T. Chuang, Anup Mahurkar, James A. Perry, Guillermo L Rivell, Jonathan Crabtree, Eugene J. Gardner
Publikováno v:
Genome Research. 31:2225-2235
Several large-scale Illumina whole-genome sequencing (WGS) and whole-exome sequencing (WES) projects have emerged recently that have provided exceptional opportunities to discover mobile element insertions (MEIs) and study the impact of these MEIs on
Autor:
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, Megan Crow, Rebecca D. Hodge, Fenna M. Krienen, Staci A. Sorensen, Jeroen Eggermont, Zizhen Yao, Brian D. Aevermann, Andrew I. Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa G. Castanon, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Nick Dee, Nikolai Dembrow, Dinh Diep, Song-Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas T. Graybuck, Brian R. Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S. Liu, Hanqing Liu, Jacinta D. Lucero, Anup Mahurkar, Delissa McMillen, Jeremy A. Miller, Marmar Moussa, Joseph R. Nery, Philip R. Nicovich, Joshua Orvis, Julia K. Osteen, Scott Owen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Olivier Poirion, Nora M. Reed, Christine Rimorin, Angeline Rivkin, William J. Romanow, Adriana E. Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Renee Zhang, Seth A. Ament, M. Margarita Behrens, Hector Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R. Hof, Thomas Höllt, Gregory D. Horwitz, C. Dirk Keene, Peter V. Kharchenko, Andrew L. Ko, Boudewijn P. Lelieveldt, Chongyuan Luo, Eran A. Mukamel, Sebastian Preissl, Aviv Regev, Bing Ren, Richard H. Scheuermann, Kimberly Smith, William J. Spain, Owen R. White, Christof Koch, Michael Hawrylycz, Bosiljka Tasic, Evan Z. Macosko, Steven A. McCarroll, Jonathan T. Ting, Hongkui Zeng, Kun Zhang, Guoping Feng, Joseph R. Ecker, Sten Linnarsson, Ed S. Lein
The primary motor cortex (M1) is essential for voluntary fine motor control and is functionally conserved across mammals. Using high-throughput transcriptomic and epigenomic profiling of over 450,000 single nuclei in human, marmoset monkey, and mouse
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c006cd91043481f7aee36762cca12127
Autor:
Z. Josh Huang, Valentine Svensson, Christine Rimorin, Sebastian Preissl, Qiwen Hu, Yang Eric Li, Carlo Colantuoni, Olivier Poirion, Darren Bertagnolli, Vasilis Ntranos, Antonio Pinto-Duarte, Megan Crow, Delissa McMillen, Evan Z. Macosko, Nick Dee, Zizhen Yao, Hongkui Zeng, Hector Roux de Bézieux, Bing Ren, Sheng-Yong Niu, Brian R. Herb, Jacinta Lucero, Ricky S. Adkins, Rongxin Fang, Eeshit Dhaval Vaishnav, Peter V. Kharchenko, Charles R. Vanderburg, Xiaomeng Hou, Joshua D. Welch, Angeline Rivkin, Sandrine Dudoit, Michael Tieu, Michael Hawrylycz, Jayaram Kancherla, Anup Mahurkar, Victor Felix, Lior Pachter, Jonathan Crabtree, Ronna Hertzano, Héctor Corrada Bravo, Aviv Regev, Wayne I. Doyle, Fangming Xie, Owen White, A. Sina Booeshaghi, Chongyuan Luo, Jeff Goldy, Andrew I. Aldrige, Joseph R. Ecker, Naeem Nadaf, Elizabeth Purdom, Hanqing Liu, Eran A. Mukamel, Kanan Lathia, Kelly Street, Michelle G. Giglio, Xinxin Wang, Julia K. Osteen, Olivia Fong, Bosiljka Tasic, Matthew Kroll, Tommaso Biancalani, Thanh Pham, John Ngai, Amy Torkelson, Thuc Nghi Nguyen, Ann Bartlett, Kimberly A. Smith, Kirsten Crichton, Herman Tung, Heather Huot Creasy, Josef Sulc, M. Margarita Behrens, Cindy T. J. van Velthoven, Koen Van den Berge, Jesse Gillis, Joseph R. Nery, Tamara Casper, Elizabeth L. Dougherty, Davide Risso, Seth A. Ament, Stephan Fischer, Joshua Orvis
Single cell transcriptomics has transformed the characterization of brain cell identity by providing quantitative molecular signatures for large, unbiased samples of brain cell populations. With the proliferation of taxonomies based on individual dat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7633422e96f93e32198625f13e63944
https://doi.org/10.1101/2020.02.29.970558
https://doi.org/10.1101/2020.02.29.970558
Autor:
Anup Mahurkar, Claire M. Fraser, Julie C. Dunning Hotopp, Amol C. Shetty, Scott G. Filler, Vincent M. Bruno, David A. Rasko
As sequencing read length has increased, researchers have quickly adopted longer reads for their experiments. Here, we examine host-pathogen interaction studies to assess if using longer reads is warranted. Six diverse datasets encountered in studies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a48f5f8598e41c423f969561ffe1e81
Autor:
Matthew Chung, Lisa Sadzewicz, Dunning Hotopp Jc, Ricky S. Adkins, Luke J. Tallon, David A. Rasko, Anup Mahurkar, Amol C. Shetty, Claire M. Fraser
MotivationThe major algorithms for quantifying transcriptomics data for differential gene expression analysis were designed for analyzing data from human or human-like genomes, specifically those with single gene transcripts and distinct transcriptio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5aa7ab447986c2a490a7ea291df01b4e
Autor:
Anup Mahurkar, Michael S. Humphrys, Garry S. A. Myers, James W. Marsh, Regan J. Hayward, Amol C. Shetty
Bacterial pathogens subvert host cells by manipulating cellular pathways for survival and replication; in turn, host cells respond to the invading pathogen through cascading changes in gene expression. Deciphering these complex temporal and spatial d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0fe27d64660787df21a64c9df6a8d4b0
https://doi.org/10.1101/098715
https://doi.org/10.1101/098715