Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Stephen H. Bryant"'
Autor:
Chunlei Liu, Renata C. Geer, Kenneth J. Addess, Anna R. Panchenko, Lewis Y. Geer, Thomas Madej, Stephen H. Bryant, Aron Marchler-Bauer, Christopher J. Lanczycki, Shennan Lu, Jie Chen, Jessica H. Fong, Dachuan Zhang, Yanli Wang, Paul A. Thiessen
Publikováno v:
Nucleic Acids Research
Close to 60% of protein sequences tracked in comprehensive databases can be mapped to a known three-dimensional (3D) structure by standard sequence similarity searches. Potentially, a great deal can be learned about proteins or protein families of in
Autor:
Farideh Chitsaz, Mikhail Mullokandov, Stephen H. Bryant, Siqian He, Jessica H. Fong, John B. Anderson, Fu-er Lu, Asba Tasneem, Myra K. Derbyshire, David I. Hurwitz, Renata C. Geer, Roxanne A. Yamashita, Carol DeWeese-Scott, James S. Song, Christopher J. Lanczycki, Zhaoxi Ke, Cynthia A. Liebert, Shennan Lu, Chunlei Liu, Dachuan Zhang, Noreen R. Gonzales, Naigong Zhang, Narmada Thanki, Lewis Y. Geer, John D. Jackson, Gabriele H. Marchler, Aron Marchler-Bauer, Marc Gwadz
Publikováno v:
Nucleic Acids Research
NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. The collection can be accessed at http://www.ncbi.nlm.nih.gov
Publikováno v:
Nucleic Acids Research
The sequencing of complete genomes has created a pressing need for automated annotation of gene function. Because domains are the basic units of protein function and evolution, a gene can be annotated from a domain database by aligning domains to the
Autor:
Anna R. Panchenko, Saikat Chakrabarti, Christopher J. Lanczycki, Teresa M. Przytycka, Stephen H. Bryant, Paul A. Thiessen
Publikováno v:
Nucleic Acids Research
Accurate multiple sequence alignments of proteins are very important to several areas of computational biology and provide an understanding of phylogenetic history of domain families, their identification and classification. This article presents a n
Autor:
Cynthia A. Liebert, David I. Hurwitz, Stephen H. Bryant, Gabriele H. Marchler, Paul A. Thiessen, Vahan Simonyan, James S. Song, Dachuan Zhang, Jodie J. Yin, John B. Anderson, Benjamin A. Shoemaker, John D. Jackson, Lewis Y. Geer, Carol DeWeese-Scott, Mikhail Mullokandov, Siqian He, Roxanne A. Yamashita, Christopher J. Lanczycki, Zhaoxi Ke, Chunlei Liu, Fu Lu, Aron Marchler-Bauer, Marc Gwadz, Praveen F. Cherukuri
Publikováno v:
Nucleic Acids Research
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and PubMed®, and can be accessed at http://www.ncbi.nlm.nih.g
Autor:
Aron Marchler-Bauer, Stephen H. Bryant
Publikováno v:
Nucleic Acids Research. 32:W327-W331
We describe the Conserved Domain Search service (CD-Search), a web-based tool for the detection of structural and functional domains in protein sequences. CD-Search uses BLAST(R) heuristics to provide a fast, interactive service, and searches a compr
Autor:
John B. Anderson, Paul A. Thiessen, David I. Hurwitz, Raja Mazumder, Natalie D. Fedorova, Jodie J. Yin, Gabriele H. Marchler, Lewis Y. Geer, Aron Marchler-Bauer, Stephen H. Bryant, John D. Jackson, Aviva R. Jacobs, James S. Song, Sona Vasudevan, Benjamin A. Shoemaker, Siqian He, Bachoti S. Rao, Anna R. Panchenko, Anastasia N. Nikolskaya, Thomas Madej, Chunlei Liu, Roxanne A. Yamashita, Cynthia A. Liebert, Vahan Simonyan, Yanli Wang, Christopher J. Lanczycki, Carol DeWeese-Scott
Publikováno v:
Nucleic acids research. 31(1)
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE(R). This allows users to search for domain types by name, for example, or to view the domain archi
Autor:
Stephen H. Bryant, Benjamin A. Shoemaker, David I. Hurwitz, Cynthia A. Liebert, Gabriele H. Marchler, Jie Chen, Lewis Y. Geer, Paul A. Thiessen, Yanli Wang, Aron Marchler-Bauer, Thomas Madej, James S. Song, Siqian He, Anna R. Panchenko, John B. Anderson, Roxanne A. Yamashita
Publikováno v:
Nucleic acids research. 30(1)
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of Entrez’s 3D-structure database is to make this inf