Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Michael Snyder"'
Autor:
Jacob Schreiber, Carles Boix, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang, Alex Hawkins-Hooker, Bernhard Schölkopf, Gabriele Schweikert, Mateo Rojas Carulla, Arif Canakoglu, Francesco Guzzo, Luca Nanni, Marco Masseroli, Mark James Carman, Pietro Pinoli, Chenyang Hong, Kevin Y. Yip, Jeffrey P. Spence, Sanjit Singh Batra, Yun S. Song, Shaun Mahony, Zheng Zhang, Wuwei Tan, Yang Shen, Yuanfei Sun, Minyi Shi, Jessika Adrian, Richard Sandstrom, Nina Farrell, Jessica Halow, Kristen Lee, Lixia Jiang, Xinqiong Yang, Charles Epstein, J. Seth Strattan, Bradley Bernstein, Michael Snyder, Manolis Kellis, William Stafford, Anshul Kundaje, ENCODE Imputation Challenge Participants
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-22 (2023)
Abstract A promising alternative to comprehensively performing genomics experiments is to, instead, perform a subset of experiments and use computational methods to impute the remainder. However, identifying the best imputation methods and what measu
Externí odkaz:
https://doaj.org/article/af322f5b401248609628ec2ad86cadd9
Autor:
David M. Gilbert, A Sandra Stehling, Zhihai Ma, Barbara J. Wold, Sonali Jha, Theresa K. Canfield, Julien Lagarde, Vanessa M. Kirkup, W. James Kent, Olgert Denas, M. A. Bender, Erica Giste, Mark Groudine, Yong Cheng, Sarah Djebali, Tyrone Ryba, Marta Byrska-Bishop, Jin Lian, Zhen Ye, Philip Cayting, Michael Snyder, Cheryl A. Keller, Alexander Dobin, Anthony Kiralusha, Tejaswini Mishra, Gayathri Balasundaram, Wulan Deng, Gaurav Jain, Ross C. Hardison, Michael J. Pazin, Stephen G. Landt, Takayo Sasaki, Mia Zhang, Manoj Hariharan, Job Dekker, Peter J. Sabo, Diane Trout, Bing Ren, Mitchell J. Weiss, Audra K. Johnson, Sherman M. Weissman, Deepti Jain, Venkat S. Malladi, Huaien Wang, David McCleary, Melissa S. Cline, Robert E. Thurman, Weisheng Wu, Samantha Kuan, Gregory E. Crawford, Yin Shen, Daniel Blankenberg, Wei Lin, Thomas R. Gingeras, Vaughan Roach, Roderic Guigó, James Taylor, Rajinder Kaul, Gilberto DeSalvo, Henry Amrhein, Carrie A. Davis, Lee Edsall, Amartya Sanyal, Katherine I. Fisher-Aylor, Feng Yue, Ali Mortazavi, Brian A. Williams, Gerd A. Blobel, Rebecca F. Lowdon, Chris Zaleski, Bryan R. Lajoie, John A. Stamatoyannopoulos, Peter J. Good, Katrina Learned, Christopher T. Morrissey, Georgi K. Marinov, Kaun-Bei Chen, Richard Sandstrom, Meagan Fastuca, Elise A. Feingold, Kate R. Rosenbloom, Max Pimkin, Leslie B Adams, Chenghai Xue, Rachel Byron, Swathi Ashok Kumar
Publikováno v:
Genome Biology
Recercat. Dipósit de la Recerca de Catalunya
instname
Recercat. Dipósit de la Recerca de Catalunya
instname
To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse geno
Autor:
Michael Snyder
Publikováno v:
Genome Biology
Michael Snyder answers Genome Biology's questions on the human and professional stories underlying his Snyderome integrative omics project.
Autor:
Michael Snyder, Jia Qian Wu
Publikováno v:
Genome Biology
Promoter-proximal polymerase II stalling prepares genes for prompt expression when signals are received.
Stalling of RNA polymerase II near the promoter has recently been found to be much more common than previously thought. Genome-wide surveys
Stalling of RNA polymerase II near the promoter has recently been found to be much more common than previously thought. Genome-wide surveys
Publikováno v:
Genome Biology
Tilescope is a fully integrated and automated new data-processing pipeline for analyzing high-density tiling-array data.
We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data . In a comp
We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data . In a comp
Publikováno v:
Genome Biology
ProCAT, a powerful and flexible new approach for analyzing many types of protein microarrays, is described.
Protein microarrays provide a versatile method for the analysis of many protein biochemical activities. Existing DNA microarray analytica
Protein microarrays provide a versatile method for the analysis of many protein biochemical activities. Existing DNA microarray analytica
Autor:
Valerie Reinke, Michael Snyder, Wei Niu, Guilin Wang, Zhi Lu, Mark Gerstein, Michelle M. Kudron
Publikováno v:
Genome Biology
Background The tumor suppressor Rb/E2F regulates gene expression to control differentiation in multiple tissues during development, although how it directs tissue-specific gene regulation in vivo is poorly understood. Results We determined the genome
Autor:
Ghia Euskirchen, Zhengdong D. Zhang, Alexander E. Urban, Jia Qian Wu, Mark Gerstein, Michael Snyder, Sherman M. Weissman, Joel Rozowsky, Jiang Du
Publikováno v:
Genome Biology
RACE sequencing of ENCODE regions shows that much of the human genome is represented in poly(A)+ RNA.
Background Recent studies of the mammalian transcriptome have revealed a large number of additional transcribed regions and extraordinary compl
Background Recent studies of the mammalian transcriptome have revealed a large number of additional transcribed regions and extraordinary compl
Publikováno v:
Genome Biology. 7:R102
Comprehensive mapping of transcription factor binding sites is essential in postgenomic biology. For this, we propose a mining approach combining noisy data from ChIP (chromatin immunoprecipitation)-chip experiments with known binding site patterns.
Publikováno v:
Genome Biology. 7:R110
Protein microarrays provide a versatile method for the analysis of many protein biochemical activities. Existing DNA microarray analytical methods do not translate to protein microarrays due to differences between the technologies. Here we report a n