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This folder contains the code and data for the figures and download comparison provided in the paper titled "Geographic and Taxonomic Occurrence R-Based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data".
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::992770eb16bfb2cec76fc6c95e425d08
This folder contains the code and data for the figures and download comparison provided in the manuscript under reviewtitled "Geographic and Taxonomic Occurrence R-Based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data".
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e8007d21efa2b67e64177e1367d7432
Autor:
Soltis, Douglas E., Soltis, Pamela S.
Publikováno v:
The Great Tree of Life
The value of the Tree of Life to human well-being and survival is enormous—our species simply cannot thrive without a biodiverse planet; that is, a healthy Tree of Life. The vast importance of the Tree of Life falls into several general categories.
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 14: Additional Text. Overview of angiosperm phylogeny at the familial level.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08a94d16cdb9c02dc42d4726b673a9d5
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 10: Figure S9. Topologies of a pruned Maximum Likelihood phylogeny of 431 representative species (���ML431_pruned���) and ASTRAL analysis (���astral431_BS10���) of a 43-species subdataset of angiosperms using 8
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2ed1466f2f11fc5be07b843c6199f13
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 7: Figure S6. Phylogenetic tree of 4792 plastomes of 445 families (including 12 gymnosperm families) of seed plants.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0ff8d6fe14b40499124ac009b00e2633
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 9: Figure S8. Phylogenetic tree of 4792 plastomes with successive removal of the long branch forming a sister relationship with a ���clade��� of Mitrastemonaceae, Thismiaceae, Apodanthaceae, and Balanophoraceae.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f963c119b68b43a4ff10c6d5e2bdb76
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 11: Figure S10. Family relationships within the pruned angiosperm phylogeny: nodes by Quartet Concordance (QC) scores for internal branches: green (QC > 0.2), blue (0.2 ��� QC > 0), orange (0 ��� QC ��� ���0.05
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26262c0d718de6bb845305e83f8713b2
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 13: Figure S12. Family relationships within the pruned angiosperm subdataset. In this tree, bootstrap/gCF/sCF scores are shown for each branch.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::753d1665668f731d6ee3f8bf1af1e080
Autor:
Li, Hong-Tao, Luo, Yang, Gan, Lu, Ma, Peng-Fei, Gao, Lian-Ming, Yang, Jun-Bo, Cai, Jie, Gitzendanner, Matthew A., Fritsch, Peter W., Zhang, Ting, Jin, Jian-Jun, Zeng, Chun-Xia, Wang, Hong, Yu, Wen-Bin, Zhang, Rong, van der Bank, Michelle, Olmstead, Richard G., Hollingsworth, Peter M., Chase, Mark W., Soltis, Douglas E., Soltis, Pamela S., Yi, Ting-Shuang, Li, De-Zhu
Additional file 3: Figure S2. Phylogenetic tree of 4782 plastomes of 445 families (including 12 gymnosperm families) of seed plants. Five problematic families (Rafflesiaceae, Apodanthaceae, Balanophoraceae, Mitrastemonaceae, and Thismiaceae) were add
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35da868fcaa024dd1ad4581353e2ab2a